| 2025 | CLEI | An Empirical Study of Remote Homology Detection using Protein Language Models. | Ruben Jimenez, Aldo Galeano, Marcelo Bez, Santiago Ferreyra, Guilherme Melo, Giorgio Valentini, Elena Casiraghi, Luca Cernuzzi, Alberto Paccanaro |
| 2021 | CLEI | A Recommender System Approach for Predicting Effective Antivirals. | Rafael Adorno, Diego Galeano, Diego H. Stalder, Luca Cernuzzi, Alberto Paccanaro |
| 2018 | IJCNN | A Recommender System Approach for Predicting Drug Side Effects. | Diego Galeano, Alberto Paccanaro |
| 2017 | CLEI | Mining the biomedical literature to predict shared drug targets in DrugBank. | Horacio Caniza, Diego Galeano, Alberto Paccanaro |
| 2017 | CLEI | Drug cocktail selection for the treatment of chagas disease: A multi-objective approach. | Mateo Torres, Juan J. Caceres, Ruben Jimenez, Victor Yubero, Celeste Vega, Miriam Rolon, Luca Cernuzzi, Benjamn Barn, Alberto Paccanaro |
| 2016 | CLEI | Combining interactomes from multiple organisms: A case study on human-mouse. | Juan J. Caceres, Alberto Paccanaro |
| 2016 | CLEI | Drug targets prediction using chemical similarity. | Diego Galeano, Alberto Paccanaro |
| 2005 | IJCNN | Inferring protein-protein interactions using interaction network topologies. | Alberto Paccanaro, Valery Trifonov, Haiyuan Yu, Mark Gerstein |
| 2003 | ICANN | Learning Distributed Representations of High-Arity Relational Data with Non-linear Relational Embedding. | Alberto Paccanaro |
| 2003 | IJCNN | Spectral clustering of protein sequences. | Alberto Paccanaro, Chakra Chennubhotla, James A. Casbon, Mansoor A. S. Saqi |
| 2000 | ICML | Learning Distributed Representations by Mapping Concepts and Relations into a Linear Space. | Alberto Paccanaro, Geoffrey E. Hinton |
| 2000 | IJCNN | Extracting Distributed Representations of Concepts and Relations from Positive and Negative Propositions. | Alberto Paccanaro, Geoffrey E. Hinton |