| 2022 | AMIA | Building Determinants of Health Ontology of Mappable Elements (DHOME). | Lauren Cuppy, Tami Crawford, Nikunja Swain, Alexander V. Alekseyenko |
| 2021 | AMIA | Colonizing Microbiome as a Determinant of COVID-19 Outcome: A Pilot Study. | Alexander V. Alekseyenko, Bashir Hamidi, Stphane M. Meystre |
| 2021 | AMIA | Natural Language Processing and COVID-19 Predictive Analytics to Enable and Optimize SARS-CoV-2 Pooled Testing. | Stphane M. Meystre, Paul M. Heider, Jihad S. Obeid, Alexander V. Alekseyenko, James E. Madory |
| 2020 | AMIA | Informatics Architecture for Phenotyped Microbiome Data Generation from Just-in-Time Clinical Microbiology Specimens from CTSA Network Producers. | Alexander V. Alekseyenko |
| 2020 | AMIA | Informatics Challenges of COVID-19 Crisis: A Comprehensive Response from An Academic Health System. | Alexander V. Alekseyenko, Leslie A. Lenert |
| 2020 | AMIA | Actionable Opportunities for Improving Opioid Prescribing through Use of Informatics. | Neel A. Shimpi, Karmen S. Williams, Alexander V. Alekseyenko |
| 2019 | AMIA | Multivariate Pathway Enrichment Analysis for Interpreting Expression Profiles. | Ali Shojaee Bakhtiari, Kristin Wallace, Alexander V. Alekseyenko |
| 2019 | AMIA | Simulation Study of Just-in-Time Specimen Recruitment from University-Wide e-Phenotypes of Interest. | Bashir Hamidi, Leslie A. Lenert, Alexander V. Alekseyenko |
| 2019 | AMIA | Actionable opportunities for improving knowledge at intersectionof dental and medical data. | Neel A. Shimpi, Karmen S. Williams, Alexander V. Alekseyenko |
| 2018 | AMIA | The Hidden Microbiome Pipeline: Providing Access to Clinical Microbiome Specimens, Sequences, and Informatics Resources. | Bashir Hamidi, Leslie A. Lenert, Jihad S. Obeid, Alexander V. Alekseyenko |
| 2017 | AMIA | The Impact of Human Microbiome on Precision Medicine. | Alexander V. Alekseyenko, Lita M. Proctor, Paul Carlson, Scott A. Jackson, Connie Chen |
| 2017 | AMIA | Local Causal Networks Discover Predictive Cytokine Biomarkers of Scleroderma. | Ali Shojaee Bakhtiari, Galina S. Bogatkevich, Alexander V. Alekseyenko |
| 2016 | AMIA | Heteroscedastic Omics Data Analysis: Distance-Based Multivariate Approach. | Alexander V. Alekseyenko |
| 2016 | AMIA | The Human Microbiome: Informatics Challenges and Opportunities. | Alexander V. Alekseyenko, Michael J. Becich, Todd Z. DeSantis, Jack A. Gilbert, Georg K. Gerber |
| 2016 | AMIA | Comprehensive Evaluation of Univariate and Multivariate Distributions for Machine Learning With Microbiome Data. | Ali Shojaee Bakhtiari, Alexander V. Alekseyenko |
| 2011 | PSB | Visualization and Statistical Comparisons of Microbial Communities Using R Packages on Phylochip Data. | Susan P. Holmes, Alexander V. Alekseyenko, Alden Timme, Tyrrell Nelson, Pankaj Jay Pasricha, Alfred Spormann |