| 2024 | MICCAI | Ground-Truth Effects in Learning-Based Fiber Orientation Distribution Estimation in Neonatal Brains. | Rizhong Lin, Hamza Kebiri, Ali Gholipour, Yufei Chen, Jean-Philippe Thiran, Davood Karimi, Meritxell Bach Cuadra |
| 2024 | MICCAI | Advanced Framework for Fetal Diffusion MRI: Dynamic Distortion and Motion Correction. | Haykel Snoussi, Davood Karimi, Onur Afacan, Mustafa Utkur, Ali Gholipour |
| 2024 | MICCAI | SpaER: Learning Spatio-temporal Equivariant Representations for Fetal Brain Motion Tracking. | Jian Wang, Razieh Faghihpirayesh, Polina Golland, Ali Gholipour |
| 2023 | MICCAI | Robust Estimation of the Microstructure of the Early Developing Brain Using Deep Learning. | Hamza Kebiri, Ali Gholipour, Rizhong Lin, Lana Vasung, Davood Karimi, Meritxell Bach Cuadra |
| 2022 | MICCAI | Deep Learning Framework for Real-Time Fetal Brain Segmentation in MRI. | Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour |
| 2022 | MICCAI | Atlas-Powered Deep Learning (ADL) - Application to Diffusion Weighted MRI. | Davood Karimi, Ali Gholipour |
| 2021 | MICCAI | Convolution-Free Medical Image Segmentation Using Transformers. | Davood Karimi, Serge Vasylechko, Ali Gholipour |
| 2021 | MICCAI | Accurate Parameter Estimation in Fetal Diffusion-Weighted MRI - Learning from Fetal and Newborn Data. | Davood Karimi, Lana Vasung, Fedel Machado-Rivas, Camilo Jaimes, Shadab Khan, Ali Gholipour |
| 2021 | MICCAI | MRI Super-Resolution Through Generative Degradation Learning. | Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield |
| 2020 | MICCAI | Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction. | Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield |
| 2019 | MICCAI | Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. | Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield |
| 2018 | MICCAI | Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging. | Shadab Khan, Caitlin K. Rollins, Cynthia M. Ortinau, Onur Afacan, Simon K. Warfield, Ali Gholipour |
| 2018 | MICCAI | Active Deep Learning with Fisher Information for Patch-Wise Semantic Segmentation. | Jamshid Sourati, Ali Gholipour, Jennifer G. Dy, Sila Kurugol, Simon K. Warfield |
| 2017 | MICCAI | Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. | Sila Kurugol, Bahram Marami, Onur Afacan, Simon K. Warfield, Ali Gholipour |
| 2017 | MICCAI | Tversky Loss Function for Image Segmentation Using 3D Fully Convolutional Deep Networks. | Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Ali Gholipour |
| 2016 | MICCAI | Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects. | Bahram Marami, Benoit Scherrer, Onur Afacan, Simon K. Warfield, Ali Gholipour |
| 2014 | MICCAI | Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models. | Ali Gholipour, Catherine Limperopoulos, Sean Clancy, Cdric Clouchoux, Alireza Akhondi Asl, Judy A. Estroff, Simon K. Warfield |
| 2011 | MICCAI | Super-Resolution in Diffusion-Weighted Imaging. | Benoit Scherrer, Ali Gholipour, Simon K. Warfield |
| 2010 | MICCAI | Maximum A Posteriori Estimation of Isotropic High-Resolution Volumetric MRI from Orthogonal Thick-Slice Scans. | Ali Gholipour, Judy A. Estroff, Mustafa Sahin, Sanjay P. Prabhu, Simon K. Warfield |
| 2008 | ICIP | Computationally efficient mutual information estimation for non-rigid image registration. | Ali Gholipour, Nasser Kehtarnavaz |
| 2007 | ICIP | Kullback-Leibler Distance Optimization for Non-rigid Registration of Echo-Planar to Structural Magnetic Resonance Brain Images. | Ali Gholipour, Nasser Kehtarnavaz, Richard W. Briggs, Kaundinya S. Gopinath |
| 2006 | ICIP | Distortion Correction via Non-rigid Registration of Functional to Anatomical Magnetic Resonance Brain Images. | Ali Gholipour, Nasser Kehtarnavaz, Kaundinya S. Gopinath, Richard W. Briggs, Michael Devous, Robert W. Haley |