| 2019 | MICCAI | Nuclear Instance Segmentation Using a Proposal-Free Spatially Aware Deep Learning Framework. | Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot |
| 2018 | MICCAI | High Throughput Computation of Reference Ranges of Biventricular Cardiac Function on the UK Biobank Population Cohort. | Rahman Attar, Marco Pereaez, Ali Gooya, Xnia Alb, Le Zhang, Stefan K. Piechnik, Stefan Neubauer, Steffen E. Petersen, Alejandro F. Frangi |
| 2018 | MICCAI | Nuclei Detection Using Mixture Density Networks. | Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot |
| 2017 | MICCAI | Generalised Coherent Point Drift for Group-Wise Registration of Multi-dimensional Point Sets. | Nishant Ravikumar, Ali Gooya, Alejandro F. Frangi, Zeike A. Taylor |
| 2017 | MICCAI | Semi-supervised Assessment of Incomplete LV Coverage in Cardiac MRI Using Generative Adversarial Nets. | Le Zhang, Ali Gooya, Alejandro F. Frangi |
| 2016 | MICCAI | Reconstruction of Coronary Artery Centrelines from X-Ray Angiography Using a Mixture of Student's t-Distributions. | Serkan imen, Ali Gooya, Nishant Ravikumar, Zeike A. Taylor, Alejandro F. Frangi |
| 2016 | MICCAI | A Multi-resolution T-Mixture Model Approach to Robust Group-Wise Alignment of Shapes. | Nishant Ravikumar, Ali Gooya, Serkan imen, Alejandro F. Frangi, Zeike A. Taylor |
| 2016 | MICCAI | Direct Estimation of Wall Shear Stress from Aneurysmal Morphology: A Statistical Approach. | Ali Sarrami-Foroushani, Toni Lassila, Jose M. Pozo, Ali Gooya, Alejandro F. Frangi |
| 2016 | MICCAI | Automated Quality Assessment of Cardiac MR Images Using Convolutional Neural Networks. | Le Zhang, Ali Gooya, Bo Dong, Rui Hua, Steffen E. Petersen, Pau Medrano-Gracia, Alejandro F. Frangi |
| 2015 | MICCAI | Joint Clustering and Component Analysis of Spatio-Temporal Shape Patterns in Myocardial Infarction. | Catarina Pinto, Serkan imen, Ali Gooya, Karim Lekadir, Alejandro F. Frangi |
| 2013 | MICCAI | A Bayesian Approach for Construction of Sparse Statistical Shape Models Using Dirichlet Distribution. | Ali Gooya, Elaheh Mousavi, Christos Davatzikos, Hongen Liao |
| 2011 | MICCAI | Joint Segmentation and Deformable Registration of Brain Scans Guided by a Tumor Growth Model. | Ali Gooya, Kilian M. Pohl, Michel Bilello, George Biros, Christos Davatzikos |
| 2010 | CVPR | Application of trace-norm and low-rank matrix decomposition for computational anatomy. | Nematollah Batmanghelich, Ali Gooya, Stathis Kanterakis, Ben Taskar, Christos Davatzikos |
| 2010 | CVPR | An EM algorithm for brain tumor image registration: A tumor growth modeling based approach. | Ali Gooya, George Biros, Christos Davatzikos |
| 2008 | MICCAI | R-PLUS: A Riemannian Anisotropic Edge Detection Scheme for Vascular Segmentation. | Ali Gooya, Takeyoshi Dohi, Ichiro Sakuma, Hongen Liao |