| 2009 | MICCAI | A Novel Intensity Similarity Metric with Soft Spatial Constraint for a Deformable Image Registration Problem in Radiation Therapy. | Ali Khamene, Darko Zikic, Mamadou Diallo, Thomas Boettger, Eike Rietzel |
| 2009 | MICCAI | Automatic Image-Based Cardiac and Respiratory Cycle Synchronization and Gating of Image Sequences. | Hari Sundar, Ali Khamene, Liron Yatziv, Chenyang Xu |
| 2009 | MICCAI | Towards Guidance of Electrophysiological Procedures with Real-Time 3D Intracardiac Echocardiography Fusion to C-arm CT. | Wolfgang Wein, Estelle Camus, Matthias John, Mamadou Diallo, Christophe Duong, Amin Al-Ahmad, Rebecca Fahrig, Ali Khamene, Chenyang Xu |
| 2008 | CVPR | Computing minimal deformations: application to construction of statistical shape models. | Darko Zikic, Michael Sass Hansen, Ben Glocker, Ali Khamene, Rasmus Larsen, Nassir Navab |
| 2008 | MICCAI | 3D Dynamic Roadmapping for Abdominal Catheterizations. | Frederik Bender, Martin Groher, Ali Khamene, Wolfgang Wein, Tim Hauke Heibel, Nassir Navab |
| 2007 | ICCV | A Unified and Efficient Approach for Free-form Deformable Registration. | Ali Khamene, Fred S. Azar, Loren Arthur Schwarz, Darko Zikic, Nassir Navab, Eike Rietzel |
| 2007 | ICCV | A Novel Image Based Verification Method for Respiratory Motion Management in Radiation Therapy. | Ali Khamene, Christian Schaller, Joachim Hornegger, Juan Carlos Celi, Barbara Ofstad, Eike Rietzel, X. Allen Li, An Tai, John E. Bayouth |
| 2007 | ISMAR | Measurement of absolute latency for video see through augmented reality. | Tobias Sielhorst, Wu Sa, Ali Khamene, Frank Sauer, Nassir Navab |
| 2007 | MICCAI | Simulation and Fully Automatic Multimodal Registration of Medical Ultrasound. | Wolfgang Wein, Ali Khamene, Dirk-Andr Clevert, Oliver Kutter, Nassir Navab |
| 2006 | MICCAI | Fast Deformable Registration of 3D-Ultrasound Data Using a Variational Approach. | Darko Zikic, Wolfgang Wein, Ali Khamene, Dirk-Andr Clevert, Nassir Navab |
| 2005 | MICCAI | A Novel Phantom-Less Spatial and Temporal Ultrasound Calibration Method. | Ali Khamene, Frank Sauer |
| 2004 | MICCAI | Characterization of Internal Organ Motion Using Skin Marker Positions. | Ali Khamene, Jan Karl Warzelhan, Sebastian Vogt, Daniel Elgort, Christophe Chefd'Hotel, Jeffrey L. Duerk, Jonathan S. Lewin, Frank K. Wacker, Frank Sauer |
| 2003 | ISMAR | A High Performance AR System for Medical Applications. | Sebastian Vogt, Ali Khamene, Frank Sauer, Andreas Keil, Heinrich Niemann |
| 2003 | MICCAI | Local 3D Reconstruction and Augmented Reality Visualization of Free-Hand Ultrasound for Needle Biopsy Procedures. | Ali Khamene, Sebastian Vogt, Fred S. Azar, Tobias Sielhorst, Frank Sauer, Heinrich Niemann |
| 2002 | ISMAR | Single Camera Tracking of Marker Clusters: Multiparameter Cluster Optimization and Experimental Verification. | Sebastian Vogt, Ali Khamene, Frank Sauer, Heinrich Niemann |
| 2002 | MICCAI | An Augmented Reality Navigation System with a Single-Camera Tracker: System Design and Needle Biopsy Phantom Trial. | Frank Sauer, Ali Khamene, Sebastian Vogt |
| 2001 | ISMAR | Optical See-through Calibration with Vision-Based Trackers: Propagation of Projection Matrices. | Yakup Genc, Mihran Tuceryan, Ali Khamene, Nassir Navab |
| 2001 | ISMAR | Augmented Reality Visualization of Ultrasound Images: System Description, Calibration, and Feature. | Frank Sauer, Ali Khamene, Benedicte Bascle, Lars Schimmang, Fabian Wenzel, Sebastian Vogt |
| 2001 | MICCAI | A Head-Mounted Display System for Augmented Reality Image Guidance: Towards Clinical Evaluation for iMRI-guided Neurosurgery. | Frank Sauer, Ali Khamene, Benedicte Bascle, Gregory J. Rubino |
| 1998 | WACV | A vision system for real-time positioning, navigation, and video mosaicing of sea floor imagery in the application of ROVs/AUVs. | Shahriar Negahdaripour, Xun Xu, Ali Khamene |
| 1997 | ICASSP | Time delay calculation of stress waves using wavelet analysis application in canine edematous lungs. | Mehran Jahed, Bijan Najafi, Ali Khamene, Stephen J. Lai-Fook |