| 2019 | AMIA | Multivariate Pathway Enrichment Analysis for Interpreting Expression Profiles. | Ali Shojaee Bakhtiari, Kristin Wallace, Alexander V. Alekseyenko |
| 2017 | AMIA | Local Causal Networks Discover Predictive Cytokine Biomarkers of Scleroderma. | Ali Shojaee Bakhtiari, Galina S. Bogatkevich, Alexander V. Alekseyenko |
| 2016 | AMIA | Comprehensive Evaluation of Univariate and Multivariate Distributions for Machine Learning With Microbiome Data. | Ali Shojaee Bakhtiari, Alexander V. Alekseyenko |
| 2012 | ICONIP | A Novel Hierarchical Statistical Model for Count Data Modeling and Its Application in Image Classification. | Ali Shojaee Bakhtiari, Nizar Bouguila |
| 2011 | ICTAI | An Expandable Hierarchical Statistical Framework for Count Data Modeling and Its Application to Object Classification. | Ali Shojaee Bakhtiari, Nizar Bouguila |
| 2010 | MMSP | A hierarchical statistical model for object classification. | Ali Shojaee Bakhtiari, Nizar Bouguila |
| 2007 | PSIVT | An Efficient Biocryptosystem Based on the Iris Biometrics. | Ali Shojaee Bakhtiari, Ali Asghar Beheshti Shirazi, Babak Zamanlooy |
| 2007 | PSIVT | A Real Time Infrared Imaging System Based on DSP & FPGA. | Babak Zamanlooy, Vahid Hamiati Vaghef, Sattar Mirzakuchaki, Ali Shojaee Bakhtiari, Reza Ebrahimi Atani |