| 2025 | WWW | In-Group Love, Out-Group Hate: A Framework to Measure Affective Polarization via Contentious Online Discussions. | Buddhika Nettasinghe, Ashwin Rao, Bohan Jiang, Allon G. Percus, Kristina Lerman |
| 2018 | ISMIS | Unsupervised Vehicle Recognition Using Incremental Reseeding of Acoustic Signatures. | Justin Sunu, Allon G. Percus, Blake Hunter |
| 2014 | ACSSC | Improving image clustering using sparse text and the wisdom of the crowds. | Anna Ma, Arjuna Flenner, Deanna Needell, Allon G. Percus |
| 2013 | ICPRAM | Multiclass Semi-supervised Learning on Graphs Using Ginzburg-Landau Functional Minimization. | Cristina Garcia-Cardona, Arjuna Flenner, Allon G. Percus |
| 2013 | ICPRAM | Multiclass Diffuse Interface Models for Semi-supervised Learning on Graphs. | Cristina Garcia-Cardona, Arjuna Flenner, Allon G. Percus |
| 2010 | WAW | Component Evolution in General Random Intersection Graphs. | Milan Bradonjic, Aric A. Hagberg, Nicolas W. Hengartner, Allon G. Percus |
| 2009 | MOBIHOC | On a locally minimum cost forwarding game. | Stephan J. Eidenbenz, Gunes Ercal-Ozkaya, Adam Meyerson, Allon G. Percus |
| 2007 | WAW | Giant Component and Connectivity in Geographical Threshold Graphs. | Milan Bradonjic, Aric A. Hagberg, Allon G. Percus |
| 2005 | Networking | Reducing Large Internet Topologies for Faster Simulations. | Vaishnavi Krishnamurthy, Michalis Faloutsos, Marek Chrobak, Li Lao, Jun-Hong Cui, Allon G. Percus |
| 2004 | ISAIM | Spines of Random Constraint Satisfaction Problems: Definition and Impact on Computational Complexity. | Stefan Boettcher, Gabriel Istrate, Allon G. Percus |
| 2003 | VCIP | Resolution scalability for arbitrary wavelet transforms in the JPEG-2000 standard. | Christopher M. Brislawn, Brendt Wohlberg, Allon G. Percus |
| 2000 | PPSN | Optimizing through Co-evolutionary Avalanches. | Stefan Boettcher, Allon G. Percus, Michelangelo Grigni |
| 2000 | SODA | Algorithms for optimizing production DNA sequencing. | va Czabarka, Goran Konjevod, Madhav V. Marathe, Allon G. Percus, David C. Torney |
| 1999 | GECCO | Extremal Optimization: Methods derived from Co-Evolution. | Stefan Boettcher, Allon G. Percus |
| 1999 | SODA | Greedy Algorithms for Optimized DNA Sequencing. | Allon G. Percus, David C. Torney |