| 2021 | EACL | CD\^2CR: Co-reference resolution across documents and domains. | James Ravenscroft, Amanda Clare, Arie Cattan, Ido Dagan, Maria Liakata |
| 2020 | PPSN | Evaluation of a Permutation-Based Evolutionary Framework for Lyndon Factorizations. | Lily Major, Amanda Clare, Jacqueline W. Daykin, Benjamin Mora, Leonel Jose Pea Gamboa, Christine Zarges |
| 2019 | GECCO | Evolutionary search techniques for the Lyndon factorization of biosequences. | Amanda Clare, Jacqueline W. Daykin, Thomas Mills, Christine Zarges |
| 2018 | ACL | HarriGT: A Tool for Linking News to Science. | James Ravenscroft, Amanda Clare, Maria Liakata |
| 2016 | LREC | Applying Core Scientific Concepts to Context-Based Citation Recommendation. | Daniel Duma, Maria Liakata, Amanda Clare, James Ravenscroft, Ewan Klein |
| 2015 | SGAI | Automatically Geotagging Articles in the Welsh Newspapers Online Collection. | Sean Sapstead, Illtud Daniel, Amanda Clare |
| 2013 | SGAI | Partridge: An Effective System for the Automatic Cassification of the Types of Academic Papers. | James Ravenscroft, Maria Liakata, Amanda Clare |
| 2008 | ISMB | The EXACT description of biomedical protocols. | Larisa N. Soldatova, Wayne Aubrey, Ross D. King, Amanda Clare |
| 2006 | ISMB | An ontology for a Robot Scientist. | Larisa N. Soldatova, Amanda Clare, Andrew Sparkes, Ross D. King |
| 2005 | DIS | The Robot Scientist Project. | Ross D. King, Michael Young, Amanda Clare, Kenneth Whelan, Jem J. Rowland |
| 2005 | EPIA | Hierarchical Multi-classification with Predictive Clustering Trees in Functional Genomics. | Jan Struyf, Saso Dzeroski, Hendrik Blockeel, Amanda Clare |
| 2004 | ICDM | Scalable Multi-Relational Association Mining. | Amanda Clare, Hugh E. Williams, Nicholas Lester |
| 2003 | ECCB | Predicting gene function in Saccharomyces cerevisiae. | Amanda Clare, Ross D. King |
| 2003 | PADL | Data Mining the Yeast Genome in a Lazy Functional Language. | Amanda Clare, Ross D. King |
| 2000 | KDD | Genome scale prediction of protein functional class from sequence using data mining. | Ross D. King, Andreas Karwath, Amanda Clare, Luc Dehaspe |