| 2021 | AMIA | Planning Equitable Clinical Trial Enrollment using Integer Programming. | Miao Qi, Amar K. Das, Kristin P. Bennett |
| 2020 | AMIA | Knowledge Extraction of Cohort Characteristics in Research Publications. | Jay D. S. Franklin, Shruthi Chari, Morgan Foreman, Oshani Seneviratne, Daniel M. Gruen, Jamie P. McCusker, Amar K. Das, Deborah L. McGuinness |
| 2020 | AMIA | Estimating Time Demand for Physicians in a Direct Primary Care Setting. | Yoonyoung Park, Issa Sylla, Sasha Ballen, Amar K. Das |
| 2020 | AMIA | Visualizing Inequities in Clinical Trials using ML Fairness Metrics. | Miao Qi, Owen Cahan, Morgan Foreman, Daniel M. Gruen, Amar K. Das, Kristin P. Bennett |
| 2020 | AMIA | A Visual Analytics Tool for Understanding Provider Networks. | Issa Sylla, Yoonyoung Park, Sasha Ballen, Amar K. Das |
| 2019 | AMIA | Analysis of Cognitive Workflows in Primary Care Chart Review. | Morgan Foreman, Yoonyoung Park, Jeff L. Sokolov, Sarah Miller, Paul C. Tang, Amar K. Das |
| 2015 | AIME | Identifying Chemotherapy Regimens in Electronic Health Record Data Using Interval-Encoded Sequence Alignment. | Haider Syed, Amar K. Das |
| 2015 | AMIA | An Associative Memory Model for Integration of Fragmented Research Data and Identification of Treatment Correlations in Breast Cancer Care. | Ashis Gopal Banerjee, Mridul Khan, John H. Higgins, Annarita Giani, Amar K. Das |
| 2015 | DSAA | Temporal Needleman-Wunsch. | Haider Syed, Amar K. Das |
| 2015 | VLDB | Vector Space Models for Encoding and Retrieving Longitudinal Medical Record Data. | Haider Syed, Amar K. Das |
| 2013 | AMIA | InSPIRE: A Web-Based Platform for Tracking and Evaluating Clinical and Translational Research Services. | Brian G. Levin, Steven B. Andrews, Amar K. Das |
| 2012 | AMIA | Oncoshare: Lessons learned from building an integrated multi-institutional database for comparative effectiveness research. | Susan C. Weber, Tina Seto, Cliff Olson, Pragati Kenkare, Allison W. Kurian, Amar K. Das |
| 2011 | AIME | A Rule-Based Method for Specifying and Querying Temporal Abstractions. | Martin J. O'Connor, Genaro Hernndez, Amar K. Das |
| 2011 | AIME | Web-Based Querying and Temporal Visualization of Longitudinal Clinical Data. | Amanda Richards, Martin J. O'Connor, Susana B. Martins, Michael Uehara-Bingen, Samson W. Tu, Amar K. Das |
| 2011 | WEBIST | Web-based Exploration of Temporal Data in Biomedicine. | Martin J. O'Connor, Mike Bingen, Amanda Richards, Samson W. Tu, Amar K. Das |
| 2009 | AMIA | Extracting Cancer Quality Indicators from Electronic Medical Records: Evaluation of an Ontology-Based Virtual Medical Record Approach. | Wei-Nchih Lee, Samson W. Tu, Amar K. Das |
| 2009 | AMIA | A General Framework for Dose Optimization. | Robert G. Turcott, Hersh Sagreiya, Euan A. Ashley, Russ B. Altman, Amar K. Das |
| 2009 | AMIA | Unsupervised Method for Extracting Machine Understandable Medical Knowledge from a Large Free Text Collection. | Rong Xu, Amar K. Das, Alan M. Garber |
| 2009 | CBMS | Ontology driven data integration for autism research. | Lynn Young, Samson W. Tu, Lakshika Tennakoon, David Vismer, Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Maryann E. Martone, Amar K. Das, Matthew J. McAuliffe |
| 2008 | AMIA | Using an Integrated Ontology and Information Model for Querying and Reasoning about Phenotypes: The Case of Autism. | Samson W. Tu, Lakshika Tennakoon, Martin J. O'Connor, Ravi D. Shankar, Amar K. Das |
| 2008 | AMIA | Unsupervised Method for Automatic Construction of a Disease Dictionary from a Large Free Text Collection. | Rong Xu, Kaustubh S. Supekar, Alex Morgan, Amar K. Das, Alan M. Garber |
| 2007 | AIME | Using Semantic Web Technologies for Knowledge-Driven Querying of Biomedical Data. | Martin J. O'Connor, Ravi D. Shankar, Samson W. Tu, Csongor Nyulas, Dave Parrish, Mark A. Musen, Amar K. Das |
| 2007 | AMIA | An Ontology-Driven Method for Hierarchical Mining of Temporal Patterns: Application to HIV Drug Resistance Research. | Rashmi Raj, Martin J. O'Connor, Amar K. Das |
| 2007 | AMIA | An Ontology-based Architecture for Integration of Clinical Trials Management Applications. | Ravi D. Shankar, Susana B. Martins, Martin J. O'Connor, David B. Parrish, Amar K. Das |
| 2006 | AMIA | A Dynamic Distributed Architecture for Temporal Data Abstraction. | Vijay P. Chauhan, Martin J. O'Connor, Amar K. Das |
| 2006 | AMIA | Knowledge-Based Method for Building Patient Decision-Analytic Tools. | Amar K. Das, Bilal A. Ahmed, Yael Garten, Jeremy I. Robin, Mary K. Goldstein |
| 2006 | AMIA | Task Analysis of Writing Hospital Admission Orders: Evidence of a Problem-Based Approach. | Christopher D. Johnson, Roni F. Zeiger, Amar K. Das, Mary K. Goldstein |
| 2006 | AMIA | Prediction of HIV Mutation Changes based on Treatment History. | Ray S. Lin, Soo-Yon Rhee, Robert W. Shafer, Amar K. Das |
| 2006 | AMIA | Ontology-Driven Mapping of Temporal Data in Biomedical Databases. | Preetha S. Narayanan, Martin J. O'Connor, Amar K. Das |
| 2006 | AMIA | Combining Text Classification and Hidden Markov Modeling Techniques for Structuring Randomized Clinical Trial Abstracts. | Rong Xu, Kaustubh S. Supekar, Yang Huang, Amar K. Das, Alan M. Garber |
| 2006 | CBMS | An Ontology-Driven Mediator for Querying Time-Oriented Biomedical Data. | Martin J. O'Connor, Ravi D. Shankar, Amar K. Das |
| 2006 | CBMS | Knowledge-Based System for Managing Complex Clinical Trials. | Ravi D. Shankar, Susana B. Martins, Martin J. O'Connor, David B. Parrish, Amar K. Das |
| 2003 | AMIA | Specifying Design Criteria for Electronic Medical Record Interface Using Cognitive Framework. | Pallav Sharda, Amar K. Das, Vimla L. Patel |
| 2002 | AMIA | SYNCHRONUS: a reusable software module for temporal integration. | Amar K. Das, Mark A. Musen |
| 2001 | AMIA | A formal method to resolve temporal mismatches in clinical databases. | Amar K. Das, Mark A. Musen |
| 1997 | AMIA | A foundational model of time for heterogeneous clinical databases. | Amar K. Das, Mark A. Musen |
| 1997 | AMIA | Theater-Style Demonstration: EON: CORBA-Based Middleware for Automation of Protocol-Directed Therapy. | Mark A. Musen, Samson W. Tu, Aneel A. Advani, Amar K. Das, Zaki Hasan, John H. Nguyen, Yuval Shahar |
| 1997 | AMIA | A temporal database mediator for protocol-based decision support. | John H. Nguyen, Yuval Shahar, Samson W. Tu, Amar K. Das, Mark A. Musen |
| 1995 | AIME | A Component-Based Architecture for Automation of Protocol-Directed Therapy. | Mark A. Musen, Samson W. Tu, Amar K. Das, Yuval Shahar |