| 2025 | IDA | Make Literature-Based Discovery Great Again Through Reproducible Pipelines. | Bojan Cestnik, Andrej Kastrin, Boshko Koloski, Nada Lavrac |
| 2024 | IDA | AHAM: Adapt, Help, Ask, Model Harvesting LLMs for Literature Mining. | Boshko Koloski, Nada Lavrac, Bojan Cestnik, Senja Pollak, Blaz Skrlj, Andrej Kastrin |
| 2019 | AMIA | SemMedDB-neo4j: A Graph Database of Biomedical Semantic Relations. | Dimitar Hristovski, Andrej Kastrin, Halil Kilicoglu |
| 2018 | AMIA | Towards using Literature-based Discovery for Interpretation of Next Generation Sequencing Results. | Dimitar Hristovski, Gaber Bergant, Andrej Kastrin, Borut Peterlin |
| 2017 | AMIA | Evolution of Research Topics in MEDLINE. | Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski |
| 2016 | AMIA | Implementing Semantics-Based Cross-domain Collaboration Recommendation in Biomedicine with a Graph Database. | Dimitar Hristovski, Andrej Kastrin, Thomas C. Rindflesch |
| 2014 | DIS | Link Prediction on the Semantic MEDLINE Network - An Approach to Literature-Based Discovery. | Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski |
| 2009 | AMIA | Semantic Relations for Interpreting DNA Microarray Data. | Dimitar Hristovski, Andrej Kastrin, Borut Peterlin, Thomas C. Rindflesch |
| 2008 | AMIA | A Fast Document Classification Algorithm for Gene Symbol Disambiguation in the BITOLA Literature-Based Discovery Support System. | Andrej Kastrin, Dimitar Hristovski |
| 2008 | ISMB | Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation. | Dimitar Hristovski, Andrej Kastrin, Borut Peterlin, Thomas C. Rindflesch |