| 2010 | CIBCB | Expanded study of efn2 thermodynamic model performance on RnaPredict, an evolutionary algorithm for RNA folding. | Kay C. Wiese, Andrew Hendriks |
| 2009 | CEC | RNA pseudoknot prediction via an evolutionary algorithm. | Kay C. Wiese, Andrew Hendriks |
| 2009 | CEC | Impact of an enhanced thermodynamic model on RnaPredict, an evolutionary algorithm for RNA secondary structure prediction. | Kay C. Wiese, Andrew Hendriks |
| 2008 | CIBCB | A hybrid clustering/evolutionary algorithm for RNA folding. | Kay C. Wiese, Andrew Hendriks |
| 2006 | CEC | A Detailed Analysis of Parallel Speedup in P-RnaPredict - An Evolutionary Algorithm for RNA Secondary Structure Prediction. | Kay C. Wiese, Andrew Hendriks |
| 2006 | CIBCB | Analysis of Thermodynamic Models and Performance in RnaPredict - An Evolutionary Algorithm for RNA Folding. | Kay C. Wiese, Andrew Hendriks, Alain Deschnes |
| 2005 | CEC | Significance of randomness in P-RnaPredict - a parallel evolutionary algorithm for RNA folding. | Kay C. Wiese, Andrew Hendriks, Alain Deschnes, Belgacem Ben Youssef |
| 2005 | CEC | Algorithms for RNA folding: a comparison of dynamic programming and parallel evolutionary algorithms. | Kay C. Wiese, Andrew Hendriks, Jagdeep Poonian |
| 2005 | GECCO | The impact of pseudorandom number quality on | Kay C. Wiese, Andrew Hendriks, Alain Deschnes, Belgacem Ben Youssef |
| 2004 | AI | Comparison of Parallel and Serial Genetic Algorithms for RNA Secondary Structure Prediction. | Andrew Hendriks, Kay C. Wiese, Edward Glen |
| 2004 | CIBCB | A parallel evolutionary algorithm for RNA secondary structure prediction using stacking-energies (INN and INN-HB). | Andrew Hendriks, Alain Deschnes, Kay C. Wiese |
| 2003 | CEC | A distributed genetic algorithm for RNA secondary structure prediction. | Andrew Hendriks, Kay C. Wiese, Edward Glen, Alain Deschnes |