| 2023 | IJCNN | Stacked Attention-based Networks for Accurate and Interpretable Health Risk Prediction. | Yuxi Liu, Zhenhao Zhang, Campbell Thompson, Richard Leibbrandt, Shaowen Qin, Antonio Jimeno-Yepes |
| 2022 | COLING | READ-BioMed@SocialDisNER: Adaptation of an Annotation System to Spanish Tweets. | Antonio Jimeno-Yepes, Karin Verspoor |
| 2022 | EMNLP | M3: Multi-level dataset for Multi-document summarisation of Medical studies. | Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Antonio Jimeno-Yepes, Jey Han Lau |
| 2021 | ECIR | Brief Description of COVID-SEE: The Scientific Evidence Explorer for COVID-19 Related Research. | Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martnez |
| 2021 | ICDAR | ICDAR 2021 Competition on Scientific Literature Parsing. | Antonio Jimeno-Yepes, Peter Zhong, Douglas Burdick |
| 2021 | NAACL | Grey-box Adversarial Attack And Defence For Sentiment Classification. | Ying Xu, Xu Zhong, Antonio Jimeno-Yepes, Jey Han Lau |
| 2020 | AMIA | Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning. | Ying Xu, Andr Leier, Tatiana T. Marquez-Lago, Jue Xie, Antonio Jimeno-Yepes, James C. Whisstock, Campbell Wilson, Jiangning Song |
| 2020 | ECCV | Image-Based Table Recognition: Data, Model, and Evaluation. | Xu Zhong, Elaheh ShafieiBavani, Antonio Jimeno-Yepes |
| 2020 | LREC | MEDLINE as a Parallel Corpus: a Survey to Gain Insight on French-, Spanish- and Portuguese-speaking Authors' Abstract Writing Practice. | Aurlie Nvol, Antonio Jimeno-Yepes, Mariana L. Neves |
| 2019 | AMIA | Neural Relation Extraction from Biomedical Literature. | Elaheh ShafieiBavani, Antonio Jimeno-Yepes |
| 2019 | ICDAR | PubLayNet: Largest Dataset Ever for Document Layout Analysis. | Xu Zhong, Jianbin Tang, Antonio Jimeno-Yepes |
| 2018 | AMIA | A hybrid approach for automated mutation annotation of the extended human mutation landscape in scientific literature. | Antonio Jimeno-Yepes, Andrew D. MacKinlay, Natalie Gunn, Christine Schieber, Noel Faux, Matthew Downton, Benjamin Goudey, Richard L. Martin |
| 2018 | LREC | Parallel Corpora for the Biomedical Domain. | Aurlie Nvol, Antonio Jimeno-Yepes, Mariana L. Neves, Karin Verspoor |
| 2017 | AMIA | Detection of adverse drug reactions using medical named entities on Twitter. | Andrew MacKinlay, Hafsah Aamer, Antonio Jimeno-Yepes |
| 2017 | BIBE | Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings. | Akm Sabbir, Antonio Jimeno-Yepes, Ramakanth Kavuluru |
| 2017 | IJCAI | Improving Classification Accuracy of Feedforward Neural Networks for Spiking Neuromorphic Chips. | Antonio Jimeno-Yepes, Jianbin Tang, Benjamin Scott Mashford |
| 2017 | IJCNLP | Named Entity Recognition with Stack Residual LSTM and Trainable Bias Decoding. | Quan Tran, Andrew MacKinlay, Antonio Jimeno-Yepes |
| 2016 | IJCNN | Weighted Population Code for low power neuromorphic image classification. | Antonio Jimeno-Yepes, Jianbin Tang, Shreya Saxena, Tobias Brosch, Arnon Amir |
| 2016 | LREC | The Scielo Corpus: a Parallel Corpus of Scientific Publications for Biomedicine. | Mariana L. Neves, Antonio Jimeno-Yepes, Aurlie Nvol |
| 2015 | CIKM | Identification and Analysis of Medical Entity Co-occurrences in Twitter. | Andrew MacKinlay, Antonio Jimeno-Yepes, Bo Han |
| 2013 | AMIA | Comparison and combination of several MeSH indexing approaches. | Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson |
| 2010 | ICMLA | Query Expansion for UMLS Metathesaurus Disambiguation Based on Automatic Corpus Extraction. | Antonio Jimeno-Yepes, Alan R. Aronson |
| 2008 | ECCB | Annotation of protein residues based on a literature analysis: cross-validation against UniProtKB. | Kevin Nagel, Antonio Jimeno-Yepes, Dietrich Rebholz-Schuhmann |