| 2001 | ISMB | Design of a compartmentalized shotgun assembler for the human genome. | Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers |
| 1996 | STOC | Large-Scale Assembly of DNA Strings and Space-Efficient Construction of Suffix Trees (Correction). | S. Rao Kosaraju, Arthur L. Delcher |
| 1995 | STOC | Large-scale assembly of DNA strings and space-efficient construction of suffix trees. | S. Rao Kosaraju, Arthur L. Delcher |
| 1995 | UAI | Logarithmic-Time Updates and Queries in Probabilistic Networks. | Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl |
| 1993 | AAAI | Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract). | Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu |
| 1993 | ISMB | Protein Secondary-Structure Modeling with Probabilistic Networks. | Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu |
| 1992 | AAAI | Improved Decision-Making in Game Trees: Recovering from Pathology. | Arthur L. Delcher, Simon Kasif |
| 1991 | IJCAI | Learning with a Helpful Teacher. | Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif |
| 1990 | FOCS | A Tree-Partitioning Technique with Applications to Expression Evaluation and Term Matching (Extended Abstract) | S. Rao Kosaraju, Arthur L. Delcher |
| 1990 | ICLP | Efficient Parallel Term Matching and Anti-Unification. | Arthur L. Delcher, Simon Kasif |