| 2019 | FUSION | Machine Learning-Enabled Adaptation of Information Fusion Software Systems. | Gerald Fry, T. Samawi, Kenny Lu, Avi Pfeffer, Curt Wu, Steve Marotta, Michael Reposa, Stephen Chong |
| 2018 | AISTATS | Structured Factored Inference for Probabilistic Programming. | Avi Pfeffer, Brian E. Ruttenberg, William Kretschmer, Alison O'Connor |
| 2015 | FUSION | Reasoning on resident space object hierarchies using probabilistic programming. | Brian E. Ruttenberg, Matthew P. Wilkins, Avi Pfeffer |
| 2014 | AAAI | Hierarchical Reasoning with Probabilistic Programming. | Brian E. Ruttenberg, Matthew P. Wilkins, Avi Pfeffer |
| 2014 | DIMVA | Identifying Shared Software Components to Support Malware Forensics. | Brian E. Ruttenberg, Craig Miles, Lee Kellogg, Vivek Notani, Michael Howard, Charles LeDoux, Arun Lakhotia, Avi Pfeffer |
| 2013 | HCI | Towards Evaluating Computational Models of Intuitive Decision Making with fMRI Data. | James Niehaus, Victoria Romero, Avi Pfeffer |
| 2011 | IJCAI | Using Emotions to Enhance Decision-Making. | Dimitrios Antos, Avi Pfeffer |
| 2010 | ILP | Practical Probabilistic Programming. | Avi Pfeffer |
| 2010 | UAI | Learning Game Representations from Data Using Rationality Constraints. | Xi Alice Gao, Avi Pfeffer |
| 2009 | IJCAI | Using Reasoning Patterns to Help Humans Solve Complex Games. | Dimitrios Antos, Avi Pfeffer |
| 2009 | IJCAI | CTPPL: A Continuous Time Probabilistic Programming Language. | Avi Pfeffer |
| 2009 | UAI | Temporal Action-Graph Games: A New Representation for Dynamic Games. | Albert Xin Jiang, Kevin Leyton-Brown, Avi Pfeffer |
| 2008 | AAAI | Using Reasoning Patterns to Simplify Games. | Dimitrios Antos, Avi Pfeffer |
| 2008 | UAI | Identifying reasoning patterns in games. | Dimitrios Antos, Avi Pfeffer |
| 2008 | UAI | Learning and Solving Many-Player Games through a Cluster-Based Representation. | Sevan G. Ficici, David C. Parkes, Avi Pfeffer |
| 2007 | AAAI | Modeling Reciprocal Behavior in Human Bilateral Negotiation. | Ya'akov Gal, Avi Pfeffer |
| 2007 | AAAI | Sampling with Memoization. | Avi Pfeffer |
| 2007 | AAAI | On the Reasoning Patterns of Agents in Games. | Avi Pfeffer, Ya'akov Gal |
| 2007 | AAAI | User Model and Utility Based Power Management. | Chih-Han Yu, Shie Mannor, Georgios Theocharous, Avi Pfeffer |
| 2007 | IJCAI | Global/Local Dynamic Models. | Avi Pfeffer, Subrata Das, David Lawless, Brenda Ng |
| 2007 | ISMB | Automatic genome-wide reconstruction of phylogenetic gene trees. | Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev |
| 2006 | ICTAI | A Junction Tree Propagation Algorithm for Bayesian Networks with Second-Order Uncertainties. | Maurizio Borsotto, Weihong Zhang, Emir Kapanci, Avi Pfeffer, Christopher Crick |
| 2006 | UAI | Approximate Separability for Weak Interaction in Dynamic Systems. | Avi Pfeffer |
| 2005 | AAAI | Functional Specification of Probabilistic Process Models. | Avi Pfeffer |
| 2005 | IJCAI | Signal-to-Score Music Transcription using Graphical Models. | Emir Kapanci, Avi Pfeffer |
| 2005 | IJCAI | Continuous Time Particle Filtering. | Brenda Ng, Avi Pfeffer, Richard Dearden |
| 2005 | UAI | Asynchronous Dynamic Bayesian Networks. | Avi Pfeffer, Terry Tai |
| 2004 | AAAI | Learning Social Preferences in Games. | Ya'akov Gal, Avi Pfeffer, Francesca Marzo, Barbara J. Grosz |
| 2004 | AAAI | Repeated Observation Models. | Avi Pfeffer |
| 2004 | SIGMETRICS | Using probabilistic reasoning to automate software tuning. | David G. Sullivan, Margo I. Seltzer, Avi Pfeffer |
| 2003 | IJCAI | Bayesian Information Extraction Network. | Leonid Peshkin, Avi Pfeffer |
| 2003 | NAACL | Bayesian Nets for Syntactic Categorization of Novel Words. | Leonid Peshkin, Avi Pfeffer, Virginia Savova |
| 2003 | UAI | Loopy Belief Propagation as a Basis for Communication in Sensor Networks. | Christopher Crick, Avi Pfeffer |
| 2002 | POPL | Stochastic lambda calculus and monads of probability distributions. | Norman Ramsey, Avi Pfeffer |
| 2002 | UAI | Factored Particles for Scalable Monitoring. | Brenda Ng, Leonid Peshkin, Avi Pfeffer |
| 2001 | IJCAI | IBAL: A Probabilistic Rational Programming Language. | Avi Pfeffer |
| 2001 | UAI | Sufficiency, Separability and Temporal Probabilistic Models. | Avi Pfeffer |
| 2000 | AAAI | Semantics and Inference for Recursive Probability Models. | Avi Pfeffer, Daphne Koller |
| 1999 | IJCAI | Learning Probabilistic Relational Models. | Nir Friedman, Lise Getoor, Daphne Koller, Avi Pfeffer |
| 1999 | UAI | SPOOK: A system for probabilistic object-oriented knowledge representation. | Avi Pfeffer, Daphne Koller, Brian Milch, Ken T. Takusagawa |
| 1998 | AAAI | Structured Representation of Complex Stochastic Systems. | Nir Friedman, Daphne Koller, Avi Pfeffer |
| 1998 | AAAI | Probabilistic Frame-Based Systems. | Daphne Koller, Avi Pfeffer |
| 1997 | AAAI | P-CLASSIC: A Tractable Probablistic Description Logic. | Daphne Koller, Alon Y. Levy, Avi Pfeffer |
| 1997 | AAAI | Effective Bayesian Inference for Stochastic Programs. | Daphne Koller, David A. McAllester, Avi Pfeffer |
| 1997 | IJCAI | Learning Probabilities for Noisy First-Order Rules. | Daphne Koller, Avi Pfeffer |
| 1997 | UAI | Object-Oriented Bayesian Networks. | Daphne Koller, Avi Pfeffer |
| 1995 | IJCAI | Generating and Solving Imperfect Information Games. | Daphne Koller, Avi Pfeffer |
| 1995 | VLDB | Generalized Search Trees for Database Systems. | Joseph M. Hellerstein, Jeffrey F. Naughton, Avi Pfeffer |