Aydin Bulu
Publication record assembled from the DBLP archive of ranked conferences.
Papers indexed
47
Venues
15
Active years
2008–2025
Best venue rank
A*
Where they publish
Papers
47 indexed papers, newest first.
| Year | Venue | Title | Authors |
|---|---|---|---|
| 2025 | RECOMB | A Partition Function Algorithm to Evaluate Inferred Subclonal Structures in Single-Cell Sequencing Data. | Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, John D. Bridgers, Eva Prez-Guijarro, Kerrie Marie, Howard H. Yang, Charli Gruen, Chih Hao Wu, Welles Robinson, Huaitian Liu, Can Kizilkale, Michael C. Kelly, Cari Smith, Sung Chin, Jessica Ebersole, Sandra Burkett, Aydin Bulu, Maxwell P. Lee, Erin K. Molloy, Teresa M. Przytycka, Glenn Merlino, Chi-Ping Day, Salem Malikic, Funda Ergn, S. Cenk Sahinalp |
| 2025 | SC | Improving SpGEMM Performance Through Matrix-Reordering and Cluster-wise Computation. | Abdullah Al Raqibul Islam, Helen Xu, Dong Dai, Aydin Bulu |
| 2025 | SC | Performance-Portable Symbolic Factorization through Common Graph Operations. | Oguz Selvitopi, Xiaoye S. Li, Aydin Bulu |
| 2024 | ICPP | Sparsity-Aware Communication for Distributed Graph Neural Network Training. | Ujjaini Mukhopadhyay, Alok Tripathy, Oguz Selvitopi, Katherine A. Yelick, Aydin Bulu |
| 2024 | ICS | RDMA-Based Algorithms for Sparse Matrix Multiplication on GPUs. | Benjamin Brock, Aydin Bulu, Katherine A. Yelick |
| 2024 | PPoPP | CPMA: An Efficient Batch-Parallel Compressed Set Without Pointers. | Brian Wheatman, Randal C. Burns, Aydin Bulu, Helen Xu |
| 2024 | SC | Accelerating Multi-GPU Embedding Retrieval with PGAS-Style Communication for Deep Learning Recommendation Systems. | Yuxin Chen, Aydin Bulu, Katherine A. Yelick, John D. Owens |
| 2024 | SC | A Sparsity-Aware Distributed-Memory Algorithm for Sparse-Sparse Matrix Multiplication. | Yuxi Hong, Aydin Bulu |
| 2024 | SPAA | Distributed-Memory Randomized Algorithms for Sparse Tensor CP Decomposition. | Vivek Bharadwaj, Osman Asif Malik, Riley Murray, Aydin Bulu, James Demmel |
| 2023 | ALENEX | Optimizing Search Layouts in Packed Memory Arrays. | Brian Wheatman, Randal C. Burns, Aydin Bulu, Helen Xu |
| 2023 | SC | Space Efficient Sequence Alignment for SRAM-Based Computing: X-Drop on the Graphcore IPU. | Luk Burchard, Max Xiaohang Zhao, Johannes Langguth, Aydin Bulu, Giulia Guidi |
| 2022 | ICPP | Atos: A Task-Parallel GPU Scheduler for Graph Analytics. | Yuxin Chen, Benjamin Brock, Serban D. Porumbescu, Aydin Bulu, Katherine A. Yelick, John D. Owens |
| 2022 | ICPP | Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly. | Giulia Guidi, Gabriel Raulet, Daniel Rokhsar, Leonid Oliker, Katherine A. Yelick, Aydin Bulu |
| 2022 | ICPP | Parallel Algorithms for Masked Sparse Matrix-Matrix Products. | Srdan Milakovic, Oguz Selvitopi, Israt Nisa, Zoran Budimlic, Aydin Bulu |
| 2022 | ISSAC | Sparse Matrices Powering Three Pillars of Science: Simulation, Data, and Learning. | Aydin Bulu |
| 2022 | PPoPP | Parallel algorithms for masked sparse matrix-matrix products. | Srdan Milakovic, Oguz Selvitopi, Israt Nisa, Zoran Budimlic, Aydin Bulu |
| 2022 | SC | Scalable Irregular Parallelism with GPUs: Getting CPUs Out of the Way. | Yuxin Chen, Benjamin Brock, Serban D. Porumbescu, Aydin Bulu, Katherine A. Yelick, John D. Owens |
| 2022 | SC | Extreme-Scale Many-against-Many Protein Similarity Search. | Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Bulu |
| 2021 | ICPP | Scaling Generalized N-Body Problems, A Case Study from Genomics. | Marquita Ellis, Aydin Bulu, Katherine A. Yelick |
| 2021 | ICS | Distributed-memory parallel algorithms for sparse times tall-skinny-dense matrix multiplication. | Oguz Selvitopi, Benjamin Brock, Israt Nisa, Alok Tripathy, Katherine A. Yelick, Aydin Bulu |
| 2021 | PPoPP | Asynchrony versus bulk-synchrony for a generalized N-body problem from genomics. | Marquita Ellis, Aydin Bulu, Katherine A. Yelick |
| 2021 | SC | Accelerating large scale | Muaaz Gul Awan, Steven Hofmeyr, Rob Egan, Nan Ding, Aydin Bulu, Jack Deslippe, Leonid Oliker, Katherine A. Yelick |
| 2021 | SIGMOD | Terrace: A Hierarchical Graph Container for Skewed Dynamic Graphs. | Prashant Pandey, Brian Wheatman, Helen Xu, Aydin Bulu |
| 2020 | SC | Distributed many-to-many protein sequence alignment using sparse matrices. | Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Bulu |
| 2020 | SC | Reducing communication in graph neural network training. | Alok Tripathy, Katherine A. Yelick, Aydin Bulu |
| 2019 | ICPP | BCL: A Cross-Platform Distributed Data Structures Library. | Benjamin Brock, Aydin Bulu, Katherine A. Yelick |
| 2019 | ICPP | diBELLA: Distributed Long Read to Long Read Alignment. | Marquita Ellis, Giulia Guidi, Aydin Bulu, Leonid Oliker, Katherine A. Yelick |
| 2019 | SC | RDMA vs. RPC for Implementing Distributed Data Structures. | Benjamin A. Brock, Yuxin Chen, Jiakun Yan, John D. Owens, Aydin Bulu, Katherine A. Yelick |
| 2018 | AISTATS | Communication-Avoiding Optimization Methods for Distributed Massive-Scale Sparse Inverse Covariance Estimation. | Penporn Koanantakool, Alnur Ali, Ariful Azad, Aydin Bulu, Dmitriy Morozov, Leonid Oliker, Katherine A. Yelick, Sang-Yun Oh |
| 2018 | EuroPar | Design Principles for Sparse Matrix Multiplication on the GPU. | Carl Yang, Aydin Bulu, John D. Owens |
| 2018 | ICPP | Implementing Push-Pull Efficiently in GraphBLAS. | Carl Yang, Aydin Bulu, John D. Owens |
| 2018 | SC | Extreme scale de novo metagenome assembly. | Evangelos Georganas, Rob Egan, Steven Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Bulu, Leonid Oliker, Katherine A. Yelick |
| 2018 | SPAA | Integrated Model, Batch, and Domain Parallelism in Training Neural Networks. | Amir Gholami, Ariful Azad, Peter H. Jin, Kurt Keutzer, Aydin Bulu |
| 2017 | EuroPar | Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. | Marquita Ellis, Evangelos Georganas, Rob Egan, Steven Hofmeyr, Aydin Bulu, Brandon Cook, Leonid Oliker, Katherine A. Yelick |
| 2017 | SC | MerBench: PGAS Benchmarks for High Performance Genome Assembly. | Evangelos Georganas, Marquita Ellis, Rob Egan, Steven Hofmeyr, Aydin Bulu, Brandon Cook, Leonid Oliker, Katherine A. Yelick |
| 2017 | SC | Scaling deep learning on GPU and knights landing clusters. | Yang You, Aydin Bulu, James Demmel |
| 2015 | CLUSTER | Distributed-Memory Algorithms for Maximal Cardinality Matching Using Matrix Algebra. | Ariful Azad, Aydin Bulu |
| 2015 | ICCS | Graphs, Matrices, and the GraphBLAS: Seven Good Reasons. | Jeremy Kepner, David A. Bader, Aydin Bulu, John R. Gilbert, Timothy G. Mattson, Henning Meyerhenke |
| 2015 | SC | HipMer: an extreme-scale de novo genome assembler. | Evangelos Georganas, Aydin Bulu, Jarrod Chapman, Steven Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick |
| 2014 | SC | Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly. | Evangelos Georganas, Aydin Bulu, Jarrod Chapman, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick |
| 2013 | SPAA | Communication optimal parallel multiplication of sparse random matrices. | Grey Ballard, Aydin Bulu, James Demmel, Laura Grigori, Benjamin Lipshitz, Oded Schwartz, Sivan Toledo |
| 2012 | CLUSTER | Can Network-Offload Based Non-blocking Neighborhood MPI Collectives Improve Communication Overheads of Irregular Graph Algorithms? | Krishna Chaitanya Kandalla, Aydin Bulu, Hari Subramoni, Karen Tomko, Jrme Vienne, Leonid Oliker, Dhabaleswar K. Panda |
| 2012 | ICASSP | Scalable complex graph analysis with the knowledge discovery toolbox. | Adam Lugowski, Aydin Bulu, John R. Gilbert, Steven P. Reinhardt |
| 2012 | SDM | A Flexible Open-Source Toolbox for Scalable Complex Graph Analysis. | Adam Lugowski, David M. Alber, Aydin Bulu, John R. Gilbert, Steven P. Reinhardt, Yun Teng, Andrew Waranis |
| 2011 | SC | Parallel breadth-first search on distributed memory systems. | Aydin Bulu, Kamesh Madduri |
| 2009 | SPAA | Parallel sparse matrix-vector and matrix-transpose-vector multiplication using compressed sparse blocks. | Aydin Bulu, Jeremy T. Fineman, Matteo Frigo, John R. Gilbert, Charles E. Leiserson |
| 2008 | ICPP | Challenges and Advances in Parallel Sparse Matrix-Matrix Multiplication. | Aydin Bulu, John R. Gilbert |