| 2020 | FUSION | Conceptual Space Modeling for Space Event Characterization. | Jeremy R. Chapman, David Kasmier, David Limbaugh, Stephen R. Gagnon, John L. Crassidis, James Llinas, Barry Smith, Alexander P. Cox |
| 2017 | WorldCIST | A Visual Representation of Part-Whole Relationships in BFO-Conformant Ontologies. | Jos M. Parente de Oliveira, Barry Smith |
| 2016 | AMIA | Interoperability Among Prenatal EHRs: A Formal Ontology Approach. | Fernanda Farinelli, Mauricio Barcellos Almeida, Peter L. Elkin, Barry Smith |
| 2016 | FOIS | Permanent Generic Relatedness and Silent Change. | Niels Grewe, Ludger Jansen, Barry Smith |
| 2016 | FOIS | The Functions of Definitions in Ontologies. | Selja Seppl, Alan Ruttenberg, Barry Smith |
| 2016 | FUSION | The Space Object Ontology. | Alexander P. Cox, Christopher K. Nebelecky, Ronald Rudnicki, William A. Tagliaferri, John L. Crassidis, Barry Smith |
| 2014 | FOIS | Applying the Realism-Based Ontology-Versioning Method for Tracking Changes in the Basic Formal Ontology. | Selja Seppl, Barry Smith, Werner Ceusters |
| 2013 | SC | Evaluation of overlapping restricted additive schwarz preconditioning for parallel solution of very large power flow problems. | Shrirang Abhyankar, Barry Smith, Emil M. Constantinescu |
| 2012 | ISPDC | Composable Linear Solvers for Multiphysics. | Jed Brown, Matthew G. Knepley, David A. May, Lois Curfman McInnes, Barry Smith |
| 2010 | FOIS | Dispositions and the Infectious Disease Ontology. | Albert Goldfain, Barry Smith, Lindsay G. Cowell |
| 2008 | FOIS | Ontology (Science). | Barry Smith |
| 2007 | AMIA | Would SNOMED CT benefit from Realism-Based Ontology Evolution? | Werner Ceusters, Kent A. Spackman, Barry Smith |
| 2007 | AMIA | What Particulars are Referred to in Electronic Health Record Data? A Case Study in Integrating Referent Tracking into an EHR Application. | Ron Rudnicki, Werner Ceusters, Shahid Manzoor, Barry Smith |
| 2007 | AMIA | Information-Theoretic Classification of SNOMED Improves the Organization of Context-Sensitive Excerpts from Cochrane Reviews. | Lee T. Sam, Tara Borlawsky, Ying Tao, Jianrong Li, Carol Friedman, Barry Smith, Yves A. Lussier |
| 2006 | AMIA | A Realism-Based Approach to the Evolution of Biomedical Ontologies. | Werner Ceusters, Barry Smith |
| 2006 | FOIS | Against Idiosyncrasy in Ontology Development. | Barry Smith |
| 2005 | AIME | Oncology Ontology in the NCI Thesaurus. | Anand Kumar, Barry Smith |
| 2005 | AMIA | A Strategy for Improving and Integrating Biomedical Ontologies. | Cornelius Rosse, Anand Kumar, Jos L. V. Mejino Jr., Daniel L. Cook, Landon T. Detwiler, Barry Smith |
| 2005 | AMIA | How to Distinguish Parthood from Location in Bio-Ontologies. | Stefan Schulz, Philipp Daumke, Barry Smith, Udo Hahn |
| 2005 | AMIA | An Ontology-Based Methodology for the Migration of Biomedical Terminologies to Electronic Health Records. | Barry Smith, Werner Ceusters |
| 2004 | BIBE | Towards a Proteomics Meta-Classification. | Anand Kumar, Barry Smith |
| 2004 | COLING | Medical WordNet: A New Methodology for the Construction and Validation of Information Resources for Consumer Health. | Barry Smith, Christiane Fellbaum |
| 2004 | KR | Ontological Theory for Ontological Engineering: Biomedical Systems Information Integration. | James Matthew Fielding, Jonathan Simon, Werner Ceusters, Barry Smith |
| 2003 | AIME | Ontology for Task-Based Clinical Guidelines and the Theory of Granular Partitions. | Anand Kumar, Barry Smith |
| 2003 | AIME | Bodily Systems and the Modular Structure of the Human Body. | Barry Smith, Igor Papakin, Katherine Munn |
| 2003 | AMIA | The Ontology of the Gene Ontology. | Barry Smith, Jennifer Williams, Steffen Schulze-Kremer |
| 2003 | KI | The Universal Medical Language System and the Gene Ontology: Some Critical Reflections. | Anand Kumar, Barry Smith |
| 2001 | FOIS | Granular partitions and vagueness. | Thomas Bittner, Barry Smith |
| 2001 | FOIS | GOL: toward an axiomatized upper-level ontology. | Wolfgang Degen, Barbara Heller, Heinrich Herre, Barry Smith |
| 2001 | FOIS | FOIS introduction: Ontology - towards a new synthesis. | Barry Smith, Christopher A. Welty |
| 1984 | CADE | The Linked Inference Principle, II: The User's Viewpoint. | Larry Wos, Robert Veroff, Barry Smith, William McCune |