| 2009 | CoNLL | A simple feature-copying approach for long-distance dependencies. | Marc B. Vilain, Jonathan Huggins, Ben Wellner |
| 2009 | RANLP | Sources of Performance in CRF Transfer Training: a Business Name-tagging Case Study. | Marc B. Vilain, Jonathan Huggins, Ben Wellner |
| 2008 | LREC | SpatialML: Annotation Scheme, Corpora, and Tools. | Inderjeet Mani, Janet Hitzeman, Justin Richer, Dave Harris, Rob Quimby, Ben Wellner |
| 2007 | EMNLP | Automatically Identifying the Arguments of Discourse Connectives. | Ben Wellner, James Pustejovsky |
| 2006 | ACL | Machine Learning of Temporal Relations. | Inderjeet Mani, Marc Verhagen, Ben Wellner, Chong Min Lee, James Pustejovsky |
| 2006 | LREC | Leveraging Machine Readable Dictionaries in Discriminative Sequence Models. | Ben Wellner, Marc B. Vilain |
| 2006 | SIGdial | Classification of Discourse Coherence Relations: An Exploratory Study using Multiple Knowledge Sources. | Ben Wellner, James Pustejovsky, Catherine Havasi, Anna Rumshisky, Roser Saur |
| 2005 | ISMB | Weakly Supervised Learning Methods for Improving the Quality of Gene Name Normalization Data. | Ben Wellner |
| 2005 | ISMB | Adaptive String Similarity Metrics for Biomedical Reference Resolution. | Ben Wellner, Jos M. Castao, James Pustejovsky |
| 2004 | UAI | An Integrated, Conditional Model of Information Extraction and Coreference with Appli. | Ben Wellner, Andrew McCallum, Fuchun Peng, Michael Hay |
| 2003 | IJCAI | Toward Conditional Models of Identity Uncertainty with Application to Proper Noun Coreference. | Andrew McCallum, Ben Wellner |
| 2001 | NAACL | Integrated Feasibility Experiment for Bio-Security: IFE-Bio, A TIDES Demonstration. | Lynette Hirschman, Kris Concepcion, Laurie E. Damianos, David Day, John Delmore, Lisa Ferro, John Griffith, John C. Henderson, Jeffrey L. Kurtz, Inderjeet Mani, Scott A. Mardis, Tom McEntee, Keith Miller, Beverly Nunam, Jay M. Ponte, Florence Reeder, Ben Wellner, George Wilson, Alexander S. Yeh |