| 2025 | AISTATS | Double Debiased Machine Learning for Mediation Analysis with Continuous Treatments. | Houssam Zenati, Judith Abcassis, Julie Josse, Bertrand Thirion |
| 2025 | ICML | False Coverage Proportion Control for Conformal Prediction. | Alexandre Blain, Bertrand Thirion, Pierre Neuvial |
| 2025 | ICML | Measuring Variable Importance in Heterogeneous Treatment Effects with Confidence. | Joseph Paillard, Angel David Reyero Lobo, Vitaliy Kolodyazhniy, Bertrand Thirion, Denis-Alexander Engemann |
| 2024 | AAAI | Variable Importance in High-Dimensional Settings Requires Grouping. | Ahmad Chamma, Bertrand Thirion, Denis A. Engemann |
| 2024 | MICCAI | Across-Subject Ensemble-Learning Alleviates the Need for Large Samples for fMRI Decoding. | Himanshu Aggarwal, Liza Al-Shikhley, Bertrand Thirion |
| 2024 | MICCAI | NeuroConText: Contrastive Text-to-Brain Mapping for Neuroscientific Literature. | Raphal Meudec, Fateme Ghayem, Jrme Docks, Demian Wassermann, Bertrand Thirion |
| 2022 | ICML | Neural Language Models are not Born Equal to Fit Brain Data, but Training Helps. | Alexandre Pasquiou, Yair Lakretz, John T. Hale, Bertrand Thirion, Christophe Pallier |
| 2021 | MICCAI | Functional Magnetic Resonance Imaging Data Augmentation Through Conditional ICA. | Badr Tajini, Hugo Richard, Bertrand Thirion |
| 2020 | ICML | Aggregation of Multiple Knockoffs. | Tuan-Binh Nguyen, Jrme-Alexis Chevalier, Bertrand Thirion, Sylvain Arlot |
| 2019 | ICML | Feature Grouping as a Stochastic Regularizer for High-Dimensional Structured Data. | Sergl Aydre, Bertrand Thirion, Gal Varoquaux |
| 2018 | MICCAI | Statistical Inference with Ensemble of Clustered Desparsified Lasso. | Jrme-Alexis Chevalier, Joseph Salmon, Bertrand Thirion |
| 2018 | MICCAI | Text to Brain: Predicting the Spatial Distribution of Neuroimaging Observations from Text Reports. | Jrme Docks, Demian Wassermann, Russell A. Poldrack, Fabian M. Suchanek, Bertrand Thirion, Gal Varoquaux |
| 2017 | MICCAI | Population-Shrinkage of Covariance to Estimate Better Brain Functional Connectivity. | Mehdi Rahim, Bertrand Thirion, Gal Varoquaux |
| 2016 | ICASSP | Local Q-linear convergence and finite-time active set identification of ADMM on a class of penalized regression problems. | Elvis Dohmatob, Michael Eickenberg, Bertrand Thirion, Gal Varoquaux |
| 2016 | ICML | Dictionary Learning for Massive Matrix Factorization. | Arthur Mensch, Julien Mairal, Bertrand Thirion, Gal Varoquaux |
| 2015 | MICCAI | Grouping Total Variation and Sparsity: Statistical Learning with Segmenting Penalties. | Michael Eickenberg, Elvis Dohmatob, Bertrand Thirion, Gal Varoquaux |
| 2015 | MICCAI | Integrating Multimodal Priors in Predictive Models for the Functional Characterization of Alzheimer's Disease. | Mehdi Rahim, Bertrand Thirion, Alexandre Abraham, Michael Eickenberg, Elvis Dohmatob, Claude Comtat, Gal Varoquaux |
| 2014 | MICCAI | Transport on Riemannian Manifold for Functional Connectivity-Based Classification. | Bernard Ng, Martin Dressler, Gal Varoquaux, Jean-Baptiste Poline, Michael D. Greicius, Bertrand Thirion |
| 2014 | MICCAI | Deriving a Multi-subject Functional-Connectivity Atlas to Inform Connectome Estimation. | Ronald Phlypo, Bertrand Thirion, Gal Varoquaux |
| 2014 | MICCAI | Principal Component Regression Predicts Functional Responses across Individuals. | Bertrand Thirion, Gal Varoquaux, Olivier Grisel, Cyril Poupon, Philippe Pinel |
| 2013 | MICCAI | Extracting Brain Regions from Rest fMRI with Total-Variation Constrained Dictionary Learning. | Alexandre Abraham, Elvis Dohmatob, Bertrand Thirion, Dimitris Samaras, Gal Varoquaux |
| 2013 | MICCAI | Enhancing the Reproducibility of Group Analysis with Randomized Brain Parcellations. | Benoit Da Mota, Virgile Fritsch, Gal Varoquaux, Vincent Frouin, Jean-Baptiste Poline, Bertrand Thirion |
| 2013 | MICCAI | Implications of Inconsistencies between fMRI and dMRI on Multimodal Connectivity Estimation. | Bernard Ng, Gal Varoquaux, Jean-Baptiste Poline, Bertrand Thirion |
| 2013 | MICCAI | Unsupervised Fiber Bundles Registration Using Weighted Measures Geometric Demons. | Viviana Siless, Sergio Medina, Pierre Fillard, Bertrand Thirion |
| 2013 | MICCAI | Bayesian Estimation of Probabilistic Atlas for Anatomically-Informed Functional MRI Group Analyses. | Hao Xu, Bertrand Thirion, Stphanie Allassonnire |
| 2012 | ICML | Small-sample brain mapping: sparse recovery on spatially correlated designs with randomization and clustering. | Gal Varoquaux, Alexandre Gramfort, Bertrand Thirion |
| 2012 | MICCAI | Non-parametric Density Modeling and Outlier-Detection in Medical Imaging Datasets. | Virgile Fritsch, Gal Varoquaux, Jean-Baptiste Poline, Bertrand Thirion |
| 2012 | MICCAI | A Novel Sparse Graphical Approach for Multimodal Brain Connectivity Inference. | Bernard Ng, Gal Varoquaux, Jean-Baptiste Poline, Bertrand Thirion |
| 2012 | MICCAI | Learning to Rank from Medical Imaging Data. | Fabian Pedregosa, Elodie Cauvet, Gal Varoquaux, Christophe Pallier, Bertrand Thirion, Alexandre Gramfort |
| 2012 | MICCAI | Improving Accuracy and Power with Transfer Learning Using a Meta-analytic Database. | Yannick Schwartz, Gal Varoquaux, Christophe Pallier, Philippe Pinel, Jean-Baptiste Poline, Bertrand Thirion |
| 2012 | MICCAI | Joint T1 and Brain Fiber Log-Demons Registration Using Currents to Model Geometry. | Viviana Siless, Joan Alexis Glauns, Pamela Guevara, Jean-Franois Mangin, Cyril Poupon, Denis Le Bihan, Bertrand Thirion, Pierre Fillard |
| 2012 | MICCAI | Graph-Based Inter-subject Classification of Local fMRI Patterns. | Sylvain Takerkart, Guillaume Auzias, Bertrand Thirion, Daniele Schn, Liva Ralaivola |
| 2011 | MICCAI | Detecting Outlying Subjects in High-Dimensional Neuroimaging Datasets with Regularized Minimum Covariance Determinant. | Virgile Fritsch, Gal Varoquaux, Benjamin Thyreau, Jean-Baptiste Poline, Bertrand Thirion |
| 2011 | MICCAI | Connectivity-Informed fMRI Activation Detection. | Bernard Ng, Rafeef Abugharbieh, Gal Varoquaux, Jean-Baptiste Poline, Bertrand Thirion |
| 2010 | CVPR | A supervised clustering approach for extracting predictive information from brain activation images. | Vincent Michel, Evelyn Eger, Christine Keribin, Jean-Baptiste Poline, Bertrand Thirion |
| 2010 | MICCAI | Inference of a HARDI Fiber Bundle Atlas Using a Two-Level Clustering Strategy. | Pamela Guevara, Cyril Poupon, Denis Rivire, Yann Cointepas, Linda Marrakchi-Kacem, Maxime Descoteaux, Pierre Fillard, Bertrand Thirion, Jean-Franois Mangin |
| 2010 | MICCAI | Multi-Class Sparse Bayesian Regression for Neuroimaging Data Analysis. | Vincent Michel, Evelyn Eger, Christine Keribin, Bertrand Thirion |
| 2010 | MICCAI | Accurate Definition of Brain Regions Position through the Functional Landmark Approach. | Bertrand Thirion, Gal Varoquaux, Jean-Baptiste Poline |
| 2010 | MICCAI | Detection of Brain Functional-Connectivity Difference in Post-stroke Patients Using Group-Level Covariance Modeling. | Gal Varoquaux, Flore Baronnet, Andreas Kleinschmidt, Pierre Fillard, Bertrand Thirion |
| 2008 | MICCAI | Probabilistic Anatomo-Functional Parcellation of the Cortex: How Many Regions?. | Alan Tucholka, Bertrand Thirion, Matthieu Perrot, Philippe Pinel, Jean-Franois Mangin, Jean-Baptiste Poline |
| 2006 | CVPR | Improving Sensitivity and Reliability of fMRI Group Studies through High Level Combination of Individual Subjects Results. | Bertrand Thirion, Alexis Roche, Philippe Ciuciu, Jean-Baptiste Poline |
| 2006 | ICASSP | Anatomo-Functional Description of the Brain : A Probabilistic Approach. | Benjamin Thyreau, Bertrand Thirion, Guillaume Flandin, Jean-Baptiste Poline |
| 2005 | MICCAI | Finding Landmarks in the Functional Brain: Detection and Use for Group Characterization. | Bertrand Thirion, Philippe Pinel, Jean-Baptiste Poline |
| 2003 | MICCAI | Feature Detection in fMRI Data: The Information Bottleneck Approach. | Bertrand Thirion, Olivier D. Faugeras |
| 2000 | CVPR | Fusion of Color, Shading and Boundary Information for Factory Pipe Segmentation. | Bertrand Thirion, Benedicte Bascle, Visvanathan Ramesh, Nassir Navab |