| 2017 | ICPRAM | A Hierarchical Tree Distance Measure for Classification. | Kent Munthe Caspersen, Martin Bjeldbak Madsen, Andreas Berre Eriksen, Bo Thiesson |
| 2015 | ICPRAM | HyperSAX: Fast Approximate Search of Multidimensional Data. | Jens Emil Gydesen, Henrik Haxholm, Niels Sonnich Poulsen, Sebastian A. Wahl, Bo Thiesson |
| 2014 | ICWSM | Discussion Graphs: Putting Social Media Analysis in Context. | Emre Kiciman, Scott Counts, Michael Gamon, Munmun De Choudhury, Bo Thiesson |
| 2013 | UAI | The Bregman Variational Dual-Tree Framework. | Saeed Amizadeh, Bo Thiesson, Milos Hauskrecht |
| 2012 | ICPRAM | Non-parametric Segmentation of Regime-switching Time Series with Oblique Switching Trees. | Alexei Bocharov, Bo Thiesson |
| 2012 | UAI | Variational Dual-Tree Framework for Large-Scale Transition Matrix Approximation. | Saeed Amizadeh, Bo Thiesson, Milos Hauskrecht |
| 2009 | IUI | Searching large indexes on tiny devices: optimizing binary search with character pinning. | Guy Shani, Christopher Meek, Tim Paek, Bo Thiesson, Gina Danielle Venolia |
| 2008 | UIST | Search Vox: leveraging multimodal refinement and partial knowledge for mobile voice search. | Tim Paek, Bo Thiesson, Yun-Cheng Ju, Bongshin Lee |
| 2007 | NAACL | K-Best Suffix Arrays. | Kenneth Ward Church, Bo Thiesson, Robert Ragno |
| 2007 | SIGIR | The wild thing goes local. | Kenneth Ward Church, Bo Thiesson |
| 2005 | ACL | The Wild Thing. | Kenneth Ward Church, Bo Thiesson |
| 2005 | AISTATS | Efficient Gradient Computation for Conditional Gaussian Models. | Bo Thiesson, Christopher Meek |
| 2004 | ECCV | Image and Video Segmentation by Anisotropic Kernel Mean Shift. | Jue Wang, Bo Thiesson, Yingqing Xu, Michael F. Cohen |
| 2004 | UAI | ARMA Time-Series Modeling with Graphical Models. | Bo Thiesson, David Maxwell Chickering, David Heckerman, Christopher Meek |
| 2003 | AISTATS | Discriminative Model Selection for Density Models. | Bo Thiesson, Christopher Meek |
| 2002 | UAI | Staged Mixture Modelling and Boosting. | Christopher Meek, Bo Thiesson, David Heckerman |
| 2001 | AISTATS | The Learning Curve Method Applied to Clustering. | Christopher Meek, Bo Thiesson, David Heckerman |
| 1998 | UAI | Learning Mixtures of DAG Models. | Bo Thiesson, Christopher Meek, David Maxwell Chickering, David Heckerman |
| 1997 | UAI | Score and Information for Recursive Exponential Models with Incomplete Data. | Bo Thiesson |
| 1995 | KDD | Accelerated Quantification of Bayesian Networks with Incomplete Data. | Bo Thiesson |