| 2025 | IDA | Make Literature-Based Discovery Great Again Through Reproducible Pipelines. | Bojan Cestnik, Andrej Kastrin, Boshko Koloski, Nada Lavrac |
| 2024 | IDA | AHAM: Adapt, Help, Ask, Model Harvesting LLMs for Literature Mining. | Boshko Koloski, Nada Lavrac, Bojan Cestnik, Senja Pollak, Blaz Skrlj, Andrej Kastrin |
| 2020 | DIS | COVID-19 Therapy Target Discovery with Context-Aware Literature Mining. | Matej Martinc, Blaz Skrlj, Sergej Pirkmajer, Nada Lavrac, Bojan Cestnik, Martin Marzidovsek, Senja Pollak |
| 2013 | DIS | A Wordification Approach to Relational Data Mining. | Matic Perovsek, Anze Vavpetic, Bojan Cestnik, Nada Lavrac |
| 2013 | IDA | Towards Narrative Ideation via Cross-Context Link Discovery Using Banded Matrices. | Matic Perovsek, Bojan Cestnik, Tanja Urbancic, Simon Colton, Nada Lavrac |
| 2011 | AIME | Evaluating Outliers for Cross-Context Link Discovery. | Borut Sluban, Matjaz Jursic, Bojan Cestnik, Nada Lavrac |
| 2009 | ISMIS | RaJoLink: A Method for Finding Seeds of Future Discoveries in Nowadays Literature. | Tanja Urbancic, Ingrid Petric, Bojan Cestnik |
| 2007 | AIME | Monitoring Human Resources of a Public Health-Care System Through Intelligent Data Analysis and Visualization. | Aleksander Pur, Marko Bohanec, Nada Lavrac, Bojan Cestnik, Marko Debeljak, Anton Gradisek |
| 2007 | AIME | Literature Mining: Towards Better Understanding of Autism. | Tanja Urbancic, Ingrid Petric, Bojan Cestnik, Marta Macedoni-Luksic |
| 2005 | AIME | Resource Modeling and Analysis of Regional Public Health Care Data by Means of Knowledge Technologies. | Nada Lavrac, Marko Bohanec, Aleksander Pur, Bojan Cestnik, Mitja Jermol, Tanja Urbancic, Marko Debeljak, Branko Kavsek, Tadeja Kopac |
| 2005 | W2GIS | Interoperable Geographic Information Services to Support Crisis Management. | Artur Rocha, Bojan Cestnik, Marco Amaro Oliveira |
| 1997 | KDD | A Dataset Decomposition Approach to Data Mining and Machine Discovery. | Blaz Zupan, Marko Bohanec, Ivan Bratko, Bojan Cestnik |
| 1990 | ECAI | Estimating Probabilities: A Crucial Task in Machine Learning. | Bojan Cestnik |
| 1988 | ECAI | Learning Redundant Rules in Noisy Domains. | Bojan Cestnik, Ivan Bratko |