| 2026 | AAAI | S²Drug: Bridging Protein Sequence and 3D Structure in Contrastive Representation Learning for Virtual Screening. | Bowei He, Bowen Gao, Yankai Chen, Yanyan Lan, Chen Ma, Philip S. Yu, Ya-Qin Zhang, Wei-Ying Ma |
| 2026 | AAAI | Learning Protein-Ligand Binding in Hyperbolic Space. | Jianhui Wang, Wenyu Zhu, Bowen Gao, Xin Hong, Ya-Qin Zhang, Wei-Ying Ma, Yanyan Lan |
| 2025 | ICASSP | Sample-level Self-paced Learning to Tackle Multimodal Imbalance Problem. | Ying Zhou, Xuefeng Liang, Yue Xu, Bowen Gao |
| 2025 | ICLR | Reframing Structure-Based Drug Design Model Evaluation via Metrics Correlated to Practical Needs. | Bowen Gao, Haichuan Tan, Yanwen Huang, Minsi Ren, Xiao Huang, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan |
| 2025 | ICLR | Redefining the task of Bioactivity Prediction. | Yanwen Huang, Bowen Gao, Yinjun Jia, Hongbo Ma, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan |
| 2024 | ICLR | Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment. | Bowen Gao, Yinjun Jia, Yuanle Mo, Yuyan Ni, Wei-Ying Ma, Zhi-Ming Ma, Yanyan Lan |
| 2024 | ICML | Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion. | Bowen Gao, Minsi Ren, Yuyan Ni, Yanwen Huang, Bo Qiang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan |
| 2023 | GLOBECOM | Unsupervised Network Traffic Classification Based on Multi-Source Synergistic Distribution Alignment. | Bowen Gao, Yang Yang, Zhipeng Gao, Peng Yu, Rui Lyu, Shaoyin Chen |
| 2023 | ICML | Coarse-to-Fine: a Hierarchical Diffusion Model for Molecule Generation in 3D. | Bo Qiang, Yuxuan Song, Minkai Xu, Jingjing Gong, Bowen Gao, Hao Zhou, Wei-Ying Ma, Yanyan Lan |
| 2023 | ICONIP | Exploring Efficient-Tuned Learning Audio Representation Method from BriVL. | Sen Fang, Yangjian Wu, Bowen Gao, Jingwen Cai, Teik Toe Teoh |
| 2020 | VTC | Dynamic Routing in Flying Ad-hoc Networks using Link Duration Based MPR Selection. | Yirui Huang, Ruiming Xie, Bowen Gao, Jian Wang |