| 2026 | AAAI | StyleDrive: Towards Driving-Style Aware Benchmarking of End-To-End Autonomous Driving. | Ruiyang Hao, Bowen Jing, Haibao Yu, Zaiqing Nie |
| 2025 | ICDM | Uncertainty Quantification in Deep Learning Based Breast Cancer Diagnosis Using Dynamic Contrast Enhanced MRI (DCE-MRI) and Treatment Response Assessment Maps (TRAMs). | Jerry Wang, Bowen Jing, Baowei Fei |
| 2025 | ICLR | ProtComposer: Compositional Protein Structure Generation with 3D Ellipsoids. | Hannes Strk, Bowen Jing, Tomas Geffner, Jason Yim, Tommi S. Jaakkola, Arash Vahdat, Karsten Kreis |
| 2024 | ICLR | Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms. | Bowen Jing, Tommi S. Jaakkola, Bonnie Berger |
| 2024 | ICML | AlphaFold Meets Flow Matching for Generating Protein Ensembles. | Bowen Jing, Bonnie Berger, Tommi S. Jaakkola |
| 2024 | ICML | Harmonic Self-Conditioned Flow Matching for joint Multi-Ligand Docking and Binding Site Design. | Hannes Strk, Bowen Jing, Regina Barzilay, Tommi S. Jaakkola |
| 2024 | ICML | Dirichlet Flow Matching with Applications to DNA Sequence Design. | Hannes Strk, Bowen Jing, Chenyu Wang, Gabriele Corso, Bonnie Berger, Regina Barzilay, Tommi S. Jaakkola |
| 2023 | ICLR | DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking. | Gabriele Corso, Hannes Strk, Bowen Jing, Regina Barzilay, Tommi S. Jaakkola |
| 2022 | ECCV | Subspace Diffusion Generative Models. | Bowen Jing, Gabriele Corso, Renato Berlinghieri, Tommi S. Jaakkola |
| 2021 | AAAI | Rotation-Invariant Gait Identification with Quaternion Convolutional Neural Networks (Student Abstract). | Bowen Jing, Vinay Uday Prabhu, Angela Gu, John Whaley |
| 2021 | ICLR | Learning from Protein Structure with Geometric Vector Perceptrons. | Bowen Jing, Stephan Eismann, Patricia Suriana, Raphael John Lamarre Townshend, Ron O. Dror |