| 2013 | AMIA | An Integrated Approach for Interpretation of Clinical NGS Genomic Variant Data. | Erin L. Crowgey, Chuming Chen, Shawn W. Polson, Hongzhan Huang, Cathy H. Wu |
| 2010 | BIBE | Prediction of Catalytic Residues in Proteins Using a Consensus of Prediction (CoP) Approach. | Natalia V. Petrova, Cathy H. Wu |
| 2007 | ICDM | Mapping Gene/Protein Names in Free Text to Biomedical Databases. | Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, Cathy H. Wu |
| 2005 | ACL | Dynamically Generating a Protein Entity Dictionary Using Online Resources. | Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu |
| 2003 | PSB | Linking Biomedical Language, Information and Knowledge - Session Introduction. | Lynette Hirschman, Carol Friedman, Robin McEntire, Cathy H. Wu |
| 2002 | PSB | Literature Data Mining for Biology - Session Introduction. | Lynette Hirschman, Jong C. Park, Jun'ichi Tsujii, Cathy H. Wu, Limsoon Wong |
| 2000 | KDD | Application of neural networks to biological data mining: a case study in protein sequence classification. | Jason Tsong-Li Wang, Qicheng Ma, Dennis E. Shasha, Cathy H. Wu |
| 1993 | ISMB | Neural Networks for Molecular Sequence Classification. | Cathy H. Wu, Michael W. Berry, Yuk-Shing Fung, Jerry McLarty |
| 1992 | SAC | CANS: an interactive neural network system for CRAY supercomputers. | George M. Whitson, Cathy H. Wu, John Taylor, Adisorn Ermongkonchai |
| 1992 | SC | Classification Artificial Neural Systems for Genome Research. | Cathy H. Wu, George M. Whitson, Chun-Tse Hsiao, Cheng-Fu Huang |
| 1990 | IJCNN | PROCANS: a protein classification system using a neural network. | Cathy H. Wu, George M. Whitson, G. J. Montllor |