| 2025 | IJCAI | Rewarding Explainability in Drug Repurposing with Knowledge Graphs. | Susana Nunes, Samy Badreddine, Catia Pesquita |
| 2024 | ECAI | Complex Multi-Ontology Alignment Through Geometric Operations on Language Embeddings. | Marta Contreiras Silva, Daniel Faria, Catia Pesquita |
| 2023 | KR | Explainable Representations for Relation Prediction in Knowledge Graphs. | Rita T. Sousa, Sara Silva, Catia Pesquita |
| 2022 | KDD | 21th International Workshop on Data Mining in Bioinformatics (BIOKDD 2022). | Da Yan, Catia Pesquita, Carsten Grg, Jake Y. Chen, Mohammed J. Zaki |
| 2018 | EKAW | A Framework to Conduct and Report on Empirical User Studies in Semantic Web Contexts. | Catia Pesquita, Valentina Ivanova, Steffen Lohmann, Patrick Lambrix |
| 2016 | BPM | Ontology-Based Approach for Heterogeneity Analysis of EA Models. | Joo Cardoso, Marzieh Bakhshandeh, Daniel Faria, Catia Pesquita, Jos Borbinha |
| 2014 | EKAW | Introduction to VISUAL 2014 - Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics. | Valentina Ivanova, Tomi Kauppinen, Steffen Lohmann, Suvodeep Mazumdar, Catia Pesquita, Kai Xu |
| 2009 | IWANN | Identifying Gene Ontology Areas for Automated Enrichment. | Catia Pesquita, Tiago Grego, Francisco M. Couto |
| 2009 | SAC | Measuring coherence between electronic and manual annotations in biological databases. | Catia Pesquita, Daniel Faria, Francisco M. Couto |
| 2008 | SAC | BOLOS: BLAST & Ontology Linked-hOmologue Stars. | Hugo P. Bastos, Catia Pesquita, Daniel Faria, Andr O. Falco |