| 2025 | GECCO | A comparison of tournament and lexicase selection paradigms in regression problems: error-based fitness versus correlation fitness. | Illya Bakurov, Aidan Murphy, Charles Ofria, Wolfgang Banzhaf |
| 2024 | GECCO | Improving Lexicase Selection with Informed Down-Sampling. | Martin Briesch, Ryan Boldi, Dominik Sobania, Alexander Lalejini, Thomas Helmuth, Franz Rothlauf, Charles Ofria, Lee Spector |
| 2023 | GECCO | Tag Affinity Criteria Influence Adaptive Evolution. | Matthew Andres Moreno, Alexander Lalejini, Charles Ofria |
| 2022 | GECCO | Measuring the ability of lexicase selection to find obscure pathways to optimality. | Jose Guadalupe Hernandez, Alexander Lalejini, Charles Ofria |
| 2022 | GECCO | Tag-based module regulation for genetic programming. | Alexander Lalejini, Matthew Andres Moreno, Charles Ofria |
| 2022 | GECCO | Hereditary stratigraphy: genome annotations to enable phylogenetic inference over distributed populations. | Matthew Andres Moreno, Emily L. Dolson, Charles Ofria |
| 2021 | GECCO | Conduit: a C++ library for best-effort high performance computing. | Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria |
| 2019 | GECCO | MABE 2.0: an introduction to MABE and a road map for the future of MABE development. | Clifford Bohm, Alexander Lalejini, Jory Schossau, Charles Ofria |
| 2019 | GECCO | Random subsampling improves performance in lexicase selection. | Jose Guadalupe Hernandez, Alexander Lalejini, Emily L. Dolson, Charles Ofria |
| 2019 | GECCO | Tag-accessed memory for genetic programming. | Alexander Lalejini, Charles Ofria |
| 2018 | GECCO | Ecological theory provides insights about evolutionary computation. | Emily L. Dolson, Charles Ofria |
| 2018 | GECCO | Visualizing the tape of life: exploring evolutionary history with virtual reality. | Emily L. Dolson, Charles Ofria |
| 2018 | GECCO | Evolving event-driven programs with SignalGP. | Alexander Lalejini, Charles Ofria |
| 2018 | GECCO | Learning an evolvable genotype-phenotype mapping. | Matthew Andres Moreno, Wolfgang Banzhaf, Charles Ofria |
| 2018 | GECCO | Digital investigations on the evolution of prokaryote photosynthesis regulation: late-breaking abstract. | Anselmo C. Pontes, Charles Ofria |
| 2016 | ALIFE | The Prisoners Dilemma, Memory, and the Early Evolution of Intelligence. | Charles Ofria, Laura M. Grabowski, Joshua R. Nahum, Riley Annis, Emily L. Dolson, Mikaela Leas |
| 2016 | ALIFE | The Evolutionary Origins of Phenotypic Plasticity. | Charles Ofria, Alexander Lalejini |
| 2016 | ALIFE | The Evolution of Evolvability: Changing Environments Promote Rapid Adaptation in Digital Organisms. | Charles Ofria, Michael J. Wiser, Rosangela Canino-Koning |
| 2016 | ALIFE | The Effects of Evolution and Spatial Structure on Diversity in Biological Reserves. | Charles Ofria, Michael J. Wiser, Emily L. Dolson |
| 2016 | GECCO | What Factors Drive the Evolution of Mutualism? | Anya E. Vostinar, Luis Zaman, Charles Ofria |
| 2014 | ALIFE | Causes vs Benefits in the Evolution of Prey Grouping. | Ritwik Biswas, David Bryson, Charles Ofria, Aaron Wagner |
| 2014 | GECCO | There and back again: gene-processing hardware for the evolution and robotic deployment of robust navigation strategies. | David M. Bryson, Aaron P. Wagner, Charles Ofria |
| 2014 | GECCO | The evolution of kin inclusivity levels. | Anya Elaine Johnson, Heather J. Goldsby, Sherri Goings, Charles Ofria |
| 2013 | GECCO | Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes. | Jeff Clune, Dusan Misevic, Charles Ofria, Richard E. Lenski, Santiago F. Elena, Rafael Sanjun |
| 2012 | ALIFE | Digital Evolution Exhibits Surprising Robustness to Poor Design Decisions. | David M. Bryson, Charles Ofria |
| 2012 | ALIFE | An ecology-based evolutionary algorithm to evolve solutions to complex problems. | Sherri Goings, Heather Goldsby, Betty H. C. Cheng, Charles Ofria |
| 2012 | ALIFE | The Evolution of Temporal Polyethism. | Heather Goldsby, Neem Serra, Fred C. Dyer, Benjamin Kerr, Charles Ofria |
| 2012 | ALIFE | Evolutionary Potential is Maximized at Intermediate Diversity Levels. | Bess L. Walker, Charles Ofria |
| 2012 | ALIFE | Finger-painting Fitness Landscapes: An Interactive Tool for Exploring Complex Evolutionary Dynamics. | Luis Zaman, Charles Ofria, Richard E. Lenski |
| 2011 | GECCO | Modeling the evolutionary dynamics of plasmids in spatial populations. | Brian D. Connelly, Luis Zaman, Philip K. McKinley, Charles Ofria |
| 2011 | GECCO | Rapid host-parasite coevolution drives the production and maintenance of diversity in digital organisms. | Luis Zaman, Suhas Devangam, Charles Ofria |
| 2010 | ALIFE | Social Structure and the Maintenance of Biodiversity. | Brian D. Connelly, Luis Zaman, Charles Ofria, Philip K. McKinley |
| 2010 | ALIFE | Early Evolution of Memory Usage in Digital Organisms. | Laura M. Grabowski, David M. Bryson, Fred C. Dyer, Charles Ofria, Robert T. Pennock |
| 2010 | GECCO | Digital evolution with avida. | Benjamin E. Beckmann, Jeff Clune, Charles Ofria |
| 2010 | GECCO | Investigating whether hyperNEAT produces modular neural networks. | Jeff Clune, Benjamin E. Beckmann, Philip K. McKinley, Charles Ofria |
| 2010 | GECCO | Evolution of division of labor in genetically homogenous groups. | Heather Goldsby, David B. Knoester, Charles Ofria |
| 2009 | CEC | Evolving coordinated quadruped gaits with the HyperNEAT generative encoding. | Jeff Clune, Benjamin E. Beckmann, Charles Ofria, Robert T. Pennock |
| 2009 | GECCO | The sensitivity of HyperNEAT to different geometric representations of a problem. | Jeff Clune, Charles Ofria, Robert T. Pennock |
| 2009 | GECCO | Problem decomposition using indirect reciprocity in evolved populations. | Heather Goldsby, Sherri Goings, Jeff Clune, Charles Ofria |
| 2008 | GECCO | Selection for group-level efficiency leads to self-regulation of population size. | Benjamin E. Beckmann, Philip K. McKinley, Charles Ofria |
| 2008 | GECCO | How generative encodings fare on less regular problems. | Jeff Clune, Charles Ofria, Robert T. Pennock |
| 2008 | GECCO | On the evolution of motility and intelligent tactic response. | Laura M. Grabowski, Wesley R. Elsberry, Charles Ofria, Robert T. Pennock |
| 2008 | GECCO | Cooperative network construction using digital germlines. | David B. Knoester, Philip K. McKinley, Charles Ofria |
| 2008 | PPSN | How a Generative Encoding Fares as Problem-Regularity Decreases. | Jeff Clune, Charles Ofria, Robert T. Pennock |
| 2007 | GECCO | Using group selection to evolve leadership in populations of self-replicating digital organisms. | David B. Knoester, Philip K. McKinley, Charles Ofria |
| 2007 | ICSE | Digitally Evolving Models for Dynamically Adaptive Systems. | Heather Goldsby, David B. Knoester, Betty H. C. Cheng, Philip K. McKinley, Charles Ofria |
| 2003 | GECCO | The Effect of Natural Selection on Phylogeny Reconstruction Algorithms. | Dehua H. Hang, Charles Ofria, Thomas M. Schmidt, Eric Torng |