| 2018 | MASS | Top-Down Indoor Localization with Wi-Fi Fingerprints Using Deep Q-Network. | Fei Dou, Jin Lu, Zigeng Wang, Xia Xiao, Jinbo Bi, Chun-Hsi Huang |
| 2015 | SC | REU site: bio-grid initiatives for interdisciplinary research and education. | Chun-Hsi Huang |
| 2006 | ICSoft | An analysis of the effects of spatial locality on the cache performance of binary search trees. | Thomas B. Puzak, Chun-Hsi Huang |
| 2005 | APBC | Exact algorithms for planted motif challenge problems. | Sanguthevar Rajasekaran, Sudha Balla, Chun-Hsi Huang |
| 2005 | APBC | Exact algorithms for motif search. | Sanguthevar Rajasekaran, Sudha Balla, Chun-Hsi Huang, Vishal Thapar, Michael R. Gryk, Mark W. Maciejewski, Martin R. Schiller |
| 2005 | CCGRID | BioGrid- bridging life science and information technology. | Chun-Hsi Huang, Sanguthevar Rajasekaran |
| 2003 | ICTAI | TROJAN: A Scalable Distributed Semantic Network System. | Chain-Wu Lee, Chun-Hsi Huang, Sanguthevar Rajasekaran |
| 2002 | CLUSTER | Parallel Pattern Identification in Biological Sequences on Clusters. | Chun-Hsi Huang, Ratnabali Biswas |
| 2002 | ISAAC | Average-Case Communication-Optimal Parallel Parenthesis Matching. | Chun-Hsi Huang, Xin He |
| 2002 | SAC | Grid-enabled parallel divide-and-conquer: theory and practice. | Chun-Hsi Huang |
| 2001 | SAC | Finding a hamiltonian paths in tournaments on clusters - a provably communication-efficient approach. | Chun-Hsi Huang, Xin He |
| 2000 | PDPTA | Scalable Coarse Grained Parallel Interval Graph Algorithms. | Xin He, Chun-Hsi Huang |
| 2000 | PDPTA | Communication Efficient Coarse-Grained Parallel Algorithm for All Nearest Smaller Values Problem and its Applications. | Chun-Hsi Huang, Xin He |
| 1999 | FOCS | Finding Double Euler Trails of Planar Graphs in Linear Time. | Zhi-Zhong Chen, Xin He, Chun-Hsi Huang |