| 2026 | ACL | Improving Retrieval-Augmented Generation without Taxonomy-based Error Categorization. | Gongbo Zhang, Yifan Peng, Chunhua Weng |
| 2025 | ACL | Natural Language Processing in Support of Evidence-based Medicine: A Scoping Review. | Zihan Xu, Haotian Ma, Yihao Ding, Gongbo Zhang, Chunhua Weng, Yifan Peng |
| 2022 | AMIA | Optimizing Clinical Research Eligibility Prescreening: An Iterative Usability Evaluation of an NLP-driven Cohort Identification Tool. | Betina Ross S. Idnay, Yilu Fang, Caitlin N. Dreisbach, Karen Marder, Chunhua Weng, Rebecca Schnall |
| 2022 | AMIA | Criteria2Query 2.0: Combining Machine Efficiency and Human Intelligence to Define a More Accurate and Feasible Cohort for Clinical Trial Recruitment. | Betina Ross S. Idnay, Yilu Fang, Yingcheng Sun, Hao Liu, Zhehuan Chen, Rebecca Schnall, Chunhua Weng |
| 2022 | AMIA | Leveraging Hierarchical Concept Relations to Improve Automatic Detection of Off-Label Drug Use in Electronic Health Records Data. | Kayla Schiffer, Chunhua Weng, Yoolim A. Choi |
| 2022 | AMIA | A Clinical Data Summarization Pipeline for Patients at Risk for Esophageal Adenocarcinoma Undergoing Endoscopic Surveillance. | Ali Soroush, Courtney J. Diamond, Haley Zylberberg, Julian Abrams, Chunhua Weng |
| 2021 | AMIA | Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. | Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei |
| 2021 | AMIA | Cognitive Function Characterization Using Electronic Health Records Notes. | Adrienne Pichon, Betina Ross S. Idnay, Rebecca Schnall, Karen Marder, Chunhua Weng |
| 2021 | AMIA | Harmonization of Measurement Codes for Concept-Oriented Lab Data Retrieval. | Matthew E. Spotnitz, Jason Patterson, Vojtech Huser, Chunhua Weng, Karthik Natarajan |
| 2020 | AMIA | Impact of IMPACT: Longitudinal Analysis of an Integrated Participant Scheduling System in a Clinical Research Setting. | Alex M. Butler, Junghwan Lee, Yat S. So, Linda Busacca, Karen Marder, Henry N. Ginsberg, Dianne Frederick, Ismael Castaneda, Elizabeth Guerrido, Chunhua Weng |
| 2020 | AMIA | The Open Health Natural Language Processing Collaboratory. | Hongfang Liu, Xiaoqian Jiang, Serguei V. S. Pakhomov, Chunhua Weng, Hua Xu |
| 2020 | AMIA | Potential Role of Clinical Trial Eligibility Criteria in Electronic Phenotyping. | Hao Liu, Chi Yuan, Alex M. Butler, Yingcheng Sun, Chunhua Weng |
| 2020 | AMIA | Characterizing database granularity using SNOMED-CT hierarchy. | Anna Ostropolets, Christian G. Reich, Patrick B. Ryan, Chunhua Weng, Anthony Molinaro, Frank J. DeFalco, Jitendra Jonnagaddala, Siaw-Teng Liaw, Hokyun Jeon, Rae Woong Park, Matthew E. Spotnitz, Karthik Natarajan, Kristin Kostka, George Argyriou, Robert T. Miller, Andrew E. Williams, Evan Minty, Jos D. Posada, George Hripcsak |
| 2020 | AMIA | Contemporary Use of Real World Data for Clinical Trial Conduct. | James R. Rogers, Junghwan Lee, Ziheng Zhou, Patrick B. Ryan, George Hripcsak, Chunhua Weng |
| 2019 | AMIA | Completeness and Concordance in Electronic Health Record (EHR) Documentation of Chemotherapy-Induced Nausea and Vomiting (CINV) in Pediatric Cancer. | Melissa Beauchemin, Rebecca Schnall, Chunhua Weng |
| 2019 | AMIA | Hidden Gaps in Using Common Data Models to Achieve Interoperability Between Electronic Phenotypes and Clinical Data. | Fabricio Sampaio Peres Kury, Li-heng Fu, Chi Yuan, Ida Sim, Simona Carini, Chunhua Weng |
| 2019 | AMIA | Clinical Use of an Information Retrieval Framework for Cohort Discovery from Electronic Health Records. | Yanshan Wang, Andrew Wen, Sijia Liu, Jennifer L. St. Sauver, Adil E. Bharucha, Chunhua Weng, Hongfang Liu |
| 2019 | AMIA | User engagement with web-based genomics education videos and implications for designing scalable patient education materials. | Julia Wynn, Wei Wei, Xinhang Li, Yat So, Suzanne R. Bakken, Chunhua Weng, Wendy K. Chung |
| 2019 | PSB | Detecting potential pleiotropy across cardiovascular and neurological diseases using univariate, bivariate, and multivariate methods on 43, 870 individuals from the eMERGE network. | Xinyuan Zhang, Yogasudha Veturi, Shefali Setia Verma, William Bone, Anurag Verma, Anastasia Lucas, Scott J. Hebbring, Joshua C. Denny, Ian B. Stanaway, Gail P. Jarvik, David R. Crosslin, Eric B. Larson, Laura Rasmussen-Torvik, Sarah A. Pendergrass, Jordan W. Smoller, Hakon Hakonarson, Patrick Sleiman, Chunhua Weng, David Fasel, Wei-Qi Wei, Iftikhar J. Kullo, Daniel J. Schaid, Wendy K. Chung, Marylyn D. Ritchie |
| 2018 | AMIA | Sequencing EHR for Disease Subtyping. | Po-Hsiang Chiu, Ning Shang, Chunhua Weng |
| 2018 | AMIA | An Exploration of the Terminology of Clinical Cognition and Reasoning. | James J. Cimino, Ziran Li, Chunhua Weng |
| 2018 | AMIA | Guideline-driven data quality assessment- A case study of warfarin management. | Xiao Dong, Yaoyun Zhang, Hua Xu, Chunhua Weng |
| 2018 | AMIA | Clinical Concept Value Sets and Interoperability in Health Data Analytics. | Sigfried Gold, Andrea Batch, Robert C. McClure, Guoqian Jiang, Hadi Kharrazi, Rishi Saripalle, Vojtech Huser, Chunhua Weng, Nancy K. Roderer, Ana Szarfman, Niklas Elmqvist, David Gotz |
| 2018 | AMIA | Dynamic Questionnaire Generation for Efficient Patient Search of Trials. | Cong Liu, Chi Yuan, Eric Pua, Paul Harris, Chunhua Weng |
| 2017 | AMIA | Clinical Trial Eligibility Criteria Fail to Meet Burden of Generalizability. | Amelia J. Averitt, Chunhua Weng, Adler J. Perotte |
| 2017 | AMIA | Discordances between Patient-Reported Family History and Family Histories in EHR. | Jung Hoon Son, Chunhua Weng |
| 2017 | AMIA | Criteria2Query: Automatically Transforming Clinical Research Eligibility Criteria Text to OMOP Common Data Model (CDM)-based Cohort Queries. | Chi Yuan, Patrick B. Ryan, Yixuan Guo, Peng Jin, Tian Kang, Chunhua Weng |
| 2016 | AMIA | SMASH: A Data-driven Informatics Method to Assist Experts in Characterizing Semantic Heterogeneity among Data Elements. | William Brown III, Chunhua Weng, David K. Vawdrey, Alex Carballo-Dieguez, Suzanne Bakken |
| 2016 | AMIA | Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. | Stphane M. Meystre, Hongfang Liu, Rong Xu, Sivaram Arabandi, Kavishwar B. Wagholikar, Jon D. Patrick, Guergana K. Savova, Chunhua Weng, Pierre Zweigenbaum, Dina Demner-Fushman, zlem Uzuner, Hua Xu |
| 2016 | AMIA | A Method for Enhancing the Portability of Electronic Phenotyping Algorithms: An eMERGE Pilot Study. | Ning Shang, Chunhua Weng, George Hripcsak |
| 2016 | PSB | Identification of Questionable Exclusion Criteria in Mental Disorder Clinical Trials Using a Medical Encyclopedia. | Handong Mao, Chunhua Weng |
| 2015 | AMIA | Simulation-based Evaluation of the Generalizability Index for Study Traits. | Zhe He, Praveen Chandar Ravichandran, Patrick B. Ryan, Chunhua Weng |
| 2015 | AMIA | Developing an Ontology from HIV-associated Elements in Research. | William Brown III, Chunhua Weng, David K. Vawdrey, Alex Carballo-Dieguez, Suzanne Bakken |
| 2015 | AMIA | What Are Frequent Data Requests from Researchers? A Conceptual Model of Researchers' EHR Data Needs for Comparative Effectiveness Research. | Gregory William Hruby, Praveen Chandar Ravichandran, Julia Hoxha, Eneida A. Mendona, David A. Hanauer, Chunhua Weng |
| 2015 | AMIA | ClinicalTrials.gov: Adding Value through Informatics. | Vojtech Huser, Alexa T. McCray, Neil R. Smalheiser, Asba Tasneem, Chunhua Weng |
| 2015 | AMIA | ArticlesAboutMe.org: Disseminating Clinical Trials Results to Patients. | Vojtech Huser, Anil Yaman, Chunhua Weng, James J. Cimino |
| 2015 | AMIA | Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach. | Guoqian Jiang, Harold R. Solbrig, Eric Prud'hommeaux, Cui Tao, Chunhua Weng, Christopher G. Chute |
| 2015 | AMIA | Initial Readability Assessment of Clinical Trial Eligibility Criteria. | Tian Kang, Nomie Elhadad, Chunhua Weng |
| 2015 | AMIA | Exploration of Temporal ICD Coding Bias Related to Acute Diabetic Conditions. | Mollie McKillop, Fernanda Polubriaginof, Chunhua Weng |
| 2015 | AMIA | Desiderata for Major Eligibility Criteria in Breast Cancer Clinical Trials. | Matthew L. Paulson, Chunhua Weng |
| 2015 | AMIA | Similarity-Based Recommendation of New Concepts to a Terminology. | Praveen Chandar Ravichandran, Anil Yaman, Julia Hoxha, Zhe He, Chunhua Weng |
| 2015 | AMIA | Understanding Challenges and Opportunities in Precision Medicine and Interoperability Using Informatics Approaches. | Jeremiah Geronimo Ronquillo, Chunhua Weng, William T. Lester |
| 2015 | AMIA | Representation of Genetic Variants in Genomic Sequencing Reports. | Evelyn Rustia, Chunhua Weng, Carol Friedman |
| 2015 | AMIA | A Framework for Assessing Clinical Data Suitability for Observational Study. | Ning Shang, Chunhua Weng, George Hripcsak |
| 2015 | AMIA | A Guideline for Assessing EHR Data Quality for Secondary Use. | Nicole Gray Weiskopf, Chunhua Weng |
| 2014 | AMIA | A Method for Analyzing Commonalities in Clinical Trial Target Populations. | Zhe He, Simona Carini, Tianyong Hao, Ida Sim, Chunhua Weng |
| 2014 | AMIA | Integrating Diverse HIV-associated Datasets via Semantic Harmonization. | William Brown III, Chunhua Weng, David K. Vawdrey, Suzanne Bakken |
| 2014 | AMIA | Could Patient Self-reported Health Data Complement EHR for Phenotyping? | Daniel Fort, Adam B. Wilcox, Chunhua Weng |
| 2014 | AMIA | What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support. | David A. Hanauer, Gregory William Hruby, Daniel Fort, Luke V. Rasmussen, Eneida A. Mendona, Chunhua Weng |
| 2014 | AMIA | Design and Evaluation of a Glomerular Disease Ontology. | Jamie S. Hirsch, Chunhua Weng |
| 2014 | AMIA | Patients Screening for Clinical Trials Using EHR Representation Similarities. | Riccardo Miotto, Chunhua Weng |
| 2014 | AMIA | Development and validation of an electronic phenotyping algorithm for chronic kidney disease. | Girish N. Nadkarni, Omri Gottesman, James G. Linneman, Herbert S. Chase, Richard L. Berg, Samira Farouk, Vaneet Lotay, Stephen B. Ellis, George Hripcsak, Peggy L. Peissig, Chunhua Weng, Rajiv Nadukuru, Erwin P. Bottinger |
| 2014 | AMIA | Network Analysis of Common Eligibility Criteria in Cancer Clinical Trials. | Chin S. Park, Jacqueline Merrill, Chunhua Weng |
| 2014 | AMIA | Unsupervised Time-Series Clustering for Identifying Uncontrolled Type-2 Diabetic Patients. | Patric V. Prado, Chunhua Weng |
| 2013 | AMIA | Design and Evaluation of a Bacterial Clinical Infectious Diseases Ontology. | Claire L. Gordon, Stephanie Pouch, Lindsay G. Cowell, Mary Regina Boland, Heather L. Platt, Albert Goldfain, Chunhua Weng |
| 2013 | AMIA | eTACTS: an Eligibility Tag Cloud-based Clinical Trial Search Engine. | Riccardo Miotto, Chunhua Weng |
| 2013 | AMIA | Sick Patients Have More Data: The Non-Random Completeness of Electronic Health Records. | Nicole Gray Weiskopf, Alex Rusanov, Chunhua Weng |
| 2013 | AMIA | Towards Computational Reuse of Clinical Research Eligibility Criteria with Collaboration across Academia, Industry, and Standardization Organizations. | Chunhua Weng, Michael N. Cantor, Adel Taweel, Theodoros N. Arvanitis, Rebecca Daniels Kush |
| 2013 | AMIA | Using Electronic Health Records To Assess Generalizability of Clinical Trials. | Chunhua Weng, Yu Li, George Hripcsak, Yuan Zhang, Jie Gao, Feng Liu, J. Thomas Bigger |
| 2012 | AMIA | Establishing Data Governance for Comparative Effectiveness Research: Experience of the Washington Heights Inwood Informatics Infrastructure for Comparative Effectiveness Research (WICER). | Suzanne Bakken, J. Thomas Bigger, Bernadette Boden-Albala, Penny Feldman, Kathleen Gallagher, Peter D. Stetson, Chunhua Weng, Adam B. Wilcox |
| 2012 | AMIA | Analysis of Query Negotiation between a Researcher and a Query Expert. | Gregory William Hruby, Adam B. Wilcox, Chunhua Weng |
| 2012 | AMIA | An ontology-based Clinical Phenotyping Framework For eMERGE Network Algorithms. | Nanfang Xu, Chunhua Weng |
| 2008 | AMIA | Comparing ICD9-Encoded Diagnoses and NLP-Processed Discharge Summaries for Clinical Trials Pre-Screening: A Case Study. | Li Li, Herbert S. Chase, Chintan Patel, Carol Friedman, Chunhua Weng |
| 2008 | AMIA | Understanding Interdisciplinary Health Sciences Collaborations: A Campus-Wide Survey of Obesity Experts. | Chunhua Weng, Dympna Gallagher, Michael E. Bales, Suzanne Bakken, Henry N. Ginsberg |
| 2006 | AMIA | A Call for Collaborative Semantic Harmonization. | Chunhua Weng, Douglas B. Fridsma |
| 2005 | AMIA | Why It Is Hard to Support Group Work in Distributed Healthcare Organizations: Empirical Knowledge of the Social-Technical Gap. | Chunhua Weng |
| 2004 | CSCW | The multiple views of inter-organizational authoring. | David W. McDonald, Chunhua Weng, John H. Gennari |
| 2004 | CSCW | Asynchronous collaborative writing through annotations. | Chunhua Weng, John H. Gennari |
| 2003 | AMIA | Scenario-based Participatory Design of A Collaborative Clinical Trial Protocol Authoring System. | Chunhua Weng, John H. Gennari, David W. McDonald |
| 2002 | AMIA | Temporal knowledge representation for scheduling tasks in clinical trial protocols. | Chunhua Weng, Michael G. Kahn, John H. Gennari |