| 2007 | ISMB | A geometric approach for the alignment of liquid chromatography - mass spectrometry data. | Eva Lange, Clemens Grpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian G. Huber, Knut Reinert |
| 2007 | RECOMB | A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. | Ole Schulz-Trieglaff, Rene Hussong, Clemens Grpl, Andreas Hildebrandt, Knut Reinert |
| 2006 | PSB | High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. | Eva Lange, Clemens Grpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt |
| 2005 | ISAAC | Sampling Unlabeled Biconnected Planar Graphs. | Manuel Bodirsky, Clemens Grpl, Mihyun Kang |
| 2003 | ICALP | Generating Labeled Planar Graphs Uniformly at Random. | Manuel Bodirsky, Clemens Grpl, Mihyun Kang |
| 2001 | WG | Lower Bounds for Approximation Algorithms for the Steiner Tree Problem. | Clemens Grpl, Stefan Hougardy, Till Nierhoff, Hans Jrgen Prmel |
| 1998 | STACS | Size and Structure of Random Ordered Binary Decision Diagrams (Extended Abstract). | Clemens Grpl, Hans Jrgen Prmel, Anand Srivastav |