| 2025 | ICCV | Probabilistic Domain Adaptation for Biomedical Image Segmentation. | Anwai Archit, Constantin Pape |
| 2025 | ICCV | Tiling Artifacts and Trade-Offs of Feature Normalization in the Segmentation of Large Biological Images. | Elena Buglakova, Anwai Archit, Edoardo D'Imprima, Julia Mahamid, Constantin Pape, Anna Kreshuk |
| 2022 | CVPR | GASP, a generalized framework for agglomerative clustering of signed graphs and its application to Instance Segmentation. | Alberto Bailoni, Constantin Pape, Nathan Htsch, Steffen Wolf, Thorsten Beier, Anna Kreshuk, Fred A. Hamprecht |
| 2022 | CVPR | Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings. | Adrian Wolny, Qin Yu, Constantin Pape, Anna Kreshuk |
| 2020 | ECCV | The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation. | Steffen Wolf, Yuyan Li, Constantin Pape, Alberto Bailoni, Anna Kreshuk, Fred A. Hamprecht |
| 2019 | MICCAI | Synthetic Patches, Real Images: Screening for Centrosome Aberrations in EM Images of Human Cancer Cells. | Artem Lukoyanov, Isabella Haberbosch, Constantin Pape, Alwin Krmer, Yannick Schwab, Anna Kreshuk |
| 2018 | ECCV | The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. | Steffen Wolf, Constantin Pape, Alberto Bailoni, Nasim Rahaman, Anna Kreshuk, Ullrich Kthe, Fred A. Hamprecht |
| 2018 | MICCAI | Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain. | Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld |