| 2025 | CIKM | Leveraging Vulnerabilities in Temporal Graph Neural Networks via Strategic High-Impact Assaults. | Donghyun Jeon, Lijing Zhu, Haifang Li, Pengze Li, Jingna Feng, Tiehang Duan, Houbing Herbert Song, Cui Tao, Shuteng Niu |
| 2025 | HCI | Constructing A Conversation-First Dialogue Model for Comprehensive, Evidence-Based Counseling for HPV Vaccination for Young Adults. | Lu Tang, Chenying Weng, Serena Hou, Lara S. Savas, Ana Neumann, Nicole Moore, Jane Hamilton, Daniel Rhee, Cui Tao, Licong Cui, Muhammad Amith |
| 2025 | TIME | Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials. | Xiaojin Li, Yan Huang, Rashmie Abeysinghe, Zenan Sun, Hongyu Chen, Pengze Li, Xing He, Shiqiang Tao, Cui Tao, Jiang Bian, Licong Cui, Guo-Qiang Zhang |
| 2024 | CHI | Translating motivational interviewing for the HPV vaccine into a computable ontology model for automated AI conversational interaction. | Nicole Moore, Muhammad Amith, Ana Neumann, Jane Hamilton, Lu Tang, Lara S. Savas, Cui Tao |
| 2023 | ECAI | Distributionally Robust Cross Subject EEG Decoding. | Tiehang Duan, Zhenyi Wang, Gianfranco Doretto, Fang Li, Cui Tao, Donald A. Adjeroh |
| 2023 | HCI | Evaluating Domain-Independent Small Talk Conversations to Improve Clinical Communication Interaction for Human and Machine. | Chloe Aguilar, Muhammad Amith, Lu Tang, Jane Hamilton, Lara S. Savas, Daniel Rhee, Tazrin Khan, Cui Tao |
| 2023 | HPCC | Empowering Personalized Health Data Queries with Knowledge Graph and GPT-Enhanced Voice Assistant. | Xin Wang, Wordh Ul Hasan, Juan Li, Rasha Hendawi, Yang Du, Bo Xie, Cui Tao |
| 2023 | ISCC | Honoring Heritage, Managing Health: A Mobile Diabetes Self-Management App for Native Americans with Cultural Sensitivity and Local Factors. | Wordh Ul Hasan, Juan Li, Shadi Alian, Tianyi Liang, Vikram Pandey, Kimia Tuz Zaman, Jun Kong, Cui Tao |
| 2023 | ISCC | Empowering Caregivers of Alzheimer's Disease and Related Dementias (ADRD) with a GPT-Powered Voice Assistant: Leveraging Peer Insights from Social Media. | Kimia Tuz Zaman, Wordh Ul Hasan, Juan Li, Cui Tao |
| 2023 | WWW | Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research. | Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao |
| 2022 | AMIA | Ontologies in the Behavioral Sciences: Accelerating Research and the Accessibility and Use of Knowledge. | Mark A. Musen, Jiang Bian, Bruce Chorpita, Vimla L. Patel, Cui Tao |
| 2022 | AMIA | Combining Transfer Learning with Graph Attention Models for HIV Risk Prediction. | Evan Yu, Cui Tao, Jingcheng Du, Degui Zhi, Yang Xiang, Kayo Fujimoto, Xi Luo, John A. Schneider |
| 2021 | AMIA | Expressing and Executing Informed Consent Permissions using SWRL: The All of Us Use Case. | Muhammad Amith, Marcelline R. Harris, Cooper Stansbury, Kathleen Ford, Frank J. Manion, Cui Tao |
| 2021 | AMIA | FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR. | Daniel J. Stone, Sijia Liu, Yuan Luo, Andrew Wen, Nansu Zong, Luke V. Rasmussen, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Fei Wang, Cui Tao, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang |
| 2021 | AMIA | Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets. | Yunpeng Zhao, Pengfei Yin, Yongqiu Li, Xing He, Jingcheng Du, Cui Tao, Yi Guo, Mattia Prosperi, Pierangelo Veltri, Xi Yang, Yonghui Wu, Jiang Bian |
| 2021 | HCI | Patient-Provider Communication Training Models for Interactive Speech Devices. | Patricia Ngantcha, Muhammad Amith, Cui Tao, Kirk Roberts |
| 2021 | HCI | Experimenting with a Prototype Interactive Narrative Game to Improve Knowledge and Beliefs for the HPV Vaccine. | Anna Zhu, Muhammad Amith, Lu Tang, Rachel Cunningham, Angela Xu, Julie A. Boom, Cui Tao |
| 2020 | AMIA | Leverage Real-World Longitudinal Data in Large Clinical Research Networks for Alzheimer's Disease and Related Dementia (ADRD). | Rui Duan, Zhaoyi Chen, Jiayi Tong, Chongliang Luo, Tianchen Lyu, Cui Tao, Demetrius Maraganore, Jiang Bian, Yong Chen |
| 2020 | AMIA | Identifying Clinical Risk Factors for Opioid Use Disorder using a Distributed Algorithm to Combine Real-World Data from a Large Clinical Data Research Network. | Jiayi Tong, Zhaoyi Chen, Rui Duan, Wei-Hsuan Lo-Ciganic, Tianchen Lyu, Cui Tao, Peter A. Merkel, Henry R. Kranzler, Jiang Bian, Yong Chen |
| 2020 | HCI | An Interactive Game for Changing Youth Behavior Regarding E-cigarettes. | Angela Xu, Muhammad Amith, Jianfu Li, Lu Tang, Cui Tao |
| 2020 | HealthCom | Development and Evaluation of ADCareOnto - an Ontology for Personalized Home Care for Persons with Alzheimer's Disease. | Juan Li, Rasha Hendawi, Vikram Pandey, Rafa Alenezi, Xin Wang, Bo Xie, Cui Tao |
| 2019 | AMIA | A Scoping Review to Identify Biobank Classification and Permissions to Share Metadata. | Marcelline R. Harris, Frank J. Manion, Madhuri Sankaranarayanapillai, Hsing-yi Song, Marisa Conte, Cui Tao |
| 2019 | AMIA | Refactoring and Expanding the Informed Consent Ontology (ICO). | Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Frank J. Manion, Cui Tao |
| 2019 | AMIA | Expanding the Representation of Permissions and Deontic Roles in the Informed Consent Ontology (ICO). | Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Elizabeth Umberfield, Frank J. Manion, Cui Tao |
| 2019 | AMIA | Relation Extraction from Clinical Narratives Using Pre-trained Language Models. | Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu |
| 2019 | HCI | NET-EXPO: A Gephi Plugin Towards Social Network Analysis of Network Exposure for Unipartite and Bipartite Graphs. | Muhammad Tuan Amith, Kayo Fujimoto, Cui Tao |
| 2019 | HealthCom | Alexa, What Should I Eat? : A Personalized Virtual Nutrition Coach for Native American Diabetes Patients Using Amazon's Smart Speaker Technology. | Bikesh Maharjan, Juan Li, Jun Kong, Cui Tao |
| 2019 | PSB | Text Mining and Machine Learning for Precision Medicine. | Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu |
| 2018 | AMIA | Development of HeartData, a Data Discovery Index Prototype for Cardiovascular data. | Jing An, Mandana Salimi, Anupama E. Gururaj, Cui Tao, Degui Zhi, Hua Xu |
| 2018 | AMIA | Mining Human Papillomavirus Vaccination Health Beliefs from Twitter Using Attentive Recurrent Neural Network. | Jingcheng Du, Fang Li, Yuxi Jia, Yang Xiang, Lu Tang, Sahiti Myneni, Cui Tao |
| 2018 | AMIA | Construction of Drug Repurposing-oriented Alzheimer's Disease Ontology. | Fang Li, Jingcheng Du, Guozheng Rao, Cui Tao |
| 2018 | AMIA | Development and Validation of an Ontological Representation of the US Common Rule. | Frank J. Manion, Marcelline R. Harris, Muhamamd F. Amith, Cui Tao |
| 2018 | AMIA | Identification of Rare Adverse Events with Year-varying Reporting Rates for FLU4 Vaccine in VAERS. | Jiayi Tong, Jing Huang, Jingcheng Du, Yi Cai, Cui Tao, Yong Chen |
| 2018 | AMIA | Asthma Onset Prediction Using Structured EMR Data. | Yang Xiang, Jun Xu, Jingcheng Du, Degui Zhi, Cui Tao |
| 2018 | AMIA | Computer Aided Diagnosis of Chest X-rays using by Combining Deep Convolutional Neural Networks. | Xinyuan Zhang, Sicheng Zhou, Luca Giancardo, Cui Tao |
| 2018 | HCI | VEO-Engine: Interfacing and Reasoning with an Emotion Ontology for Device Visual Expression. | Muhammad Amith, Rebecca Lin, Chen Liang, Yang Gong, Cui Tao |
| 2017 | AMIA | From Scoping Review to Metadata: An Evidence-Based Approach to Identifying Informed Consent Metadata for Biorepositories. | Marcelline R. Harris, Frank J. Manion, Hsing-yi Song, Yongqun He, Muhamamd F. Amith, Cui Tao |
| 2017 | AMIA | Big Data to Knowledge (BD2K) and the Application of Metadata. | Guoqian Jiang, Walter S. Campbell, Timothy Clark, Cui Tao, Mark A. Musen |
| 2017 | AMIA | A Twitter Study of the Relationship between the Geographic Variations of HPV Vaccination Rates and Online Information in the United States. | Hansi Zhang, Yunpeng Zhao, Christopher Wheldon, Xinsong Du, Terrell Brown, Yi Guo, Stephanie Staras, Jingcheng Du, Cui Tao, Jiang Bian |
| 2016 | AMIA | A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. | Jeffrey S. Grethe, Ibrahim Burak zyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. Gonzlez-Beltrn, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado |
| 2016 | AMIA | Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. | Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak zyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. Gonzlez-Beltrn, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado |
| 2015 | AMIA | Model Checking for Verification of Interactive Health IT Systems. | Keith A. Butler, Eric Mercer, Ali Bahrami, Cui Tao |
| 2015 | AMIA | Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach. | Guoqian Jiang, Harold R. Solbrig, Eric Prud'hommeaux, Cui Tao, Chunhua Weng, Christopher G. Chute |
| 2015 | AMIA | Analysis of empty responses from electronic resources in infobutton managers. | Jie Long, Nathan C. Hulse, Cui Tao |
| 2014 | AMIA | Enhancing the TURF Framework with a Workflow Ontology. | Craig Harrington, Cui Tao, Keith A. Butler, Jiajie Zhang |
| 2014 | AMIA | Enabling Locally-Developed Content For Access Through the Infobutton By Means of Automated Concept Annotation. | Nathan C. Hulse, Jie Long, Xiaomin Xu, Cui Tao |
| 2014 | AMIA | An Integrative Framework for Drug Target Prediction and Repurposing. | Jingchun Sun, Cui Tao, Kevin W. Zhu, W. Jim Zheng, Junjie Chen, Hua Xu |
| 2014 | PAKDD | Linked Vaccine Adverse Event Data Representation from VAERS for Biomedical Informatics Research. | Cui Tao, Puqiang Wu, Yuji Zhang |
| 2014 | PSB | Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches. | Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute |
| 2013 | AMIA | Combining Infobuttons and Semantic Web Rules for Identifying Patterns and Delivering Highly-Personalized Education Materials. | Nathan C. Hulse, Jie Long, Cui Tao |
| 2013 | AMIA | Coreference Resolution from Medical Corpus with Topic Modeling. | Dingcheng Li, Liwei Wang, Cui Tao, Christopher G. Chute, Hongfang Liu |
| 2013 | AMIA | Adding Search Engine Functionality to Infobutton Manager Platform. | Jie Long, Nathan C. Hulse, Cui Tao, Guilherme Del Fiol |
| 2013 | AMIA | Introduction and Implementation of Common Terminology Services 2 (CTS2). | Cui Tao, Harold R. Solbrig, Craig Stancl, Kevin J. Peterson, Cory M. Endle, Scott Bauer, Deepak K. Sharma, Christopher G. Chute |
| 2012 | AMIA | Common Terminology Services 2 (CTS2) for Biomedical Community. | Cui Tao, Harold R. Solbrig, Pradip Kanjamala, Kevin J. Peterson, Craig Stancle, Christopher G. Chute |
| 2012 | CIKM | An overview of electronic health information management systems quality assessment. | Matt-Mouley Bouamrane, Frances S. Mair, Cui Tao |
| 2012 | CIKM | Modeling UIMA type system using web ontology language: towards interoperability among UIMA-based NLP tools. | Hongfang Liu, Stephen T. Wu, Cui Tao, Christopher G. Chute |
| 2012 | CIKM | Managing interoperability and compleXity in health systems - MIXHS'12. | Cui Tao, Matt-Mouley Bouamrane |
| 2012 | CIKM | Optimizing semantic MEDLINE for translational science studies using semantic web technologies. | Cui Tao, Yuji Zhang, Guoqian Jiang, Matt-Mouley Bouamrane, Christopher G. Chute |
| 2011 | CIKM | Managing interoperability and complexity inhealth systems: MIXHS'11 workshop summary. | Matt-Mouley Bouamrane, Cui Tao |
| 2010 | ER | KBB: A Knowledge-Bundle Builder for Research Studies. | David W. Embley, Stephen W. Liddle, Deryle W. Lonsdale, Aaron P. Stewart, Cui Tao |
| 2009 | ER | FOCIH: Form-Based Ontology Creation and Information Harvesting. | Cui Tao, David W. Embley, Stephen W. Liddle |
| 2008 | ER | A Conceptual-Model-Based Computational Alembic for a Web of Knowledge. | David W. Embley, Stephen W. Liddle, Deryle W. Lonsdale, George Nagy, Yuri A. Tijerino, Robert Clawson, Jordan Crabtree, Yihong Ding, Piyushee Jha, Zonghui Lian, Stephen Lynn, Raghav K. Padmanabhan, Jeff Peters, Cui Tao, Robby Watts, Charla Woodbury, Andrew Zitzelberger |
| 2007 | ER | Automatic Hidden-Web Table Interpretation by Sibling Page Comparison. | Cui Tao, David W. Embley |
| 2007 | ER | Seed-Based Generation of Personalized Bio-ontologies for Information Extraction. | Cui Tao, David W. Embley |
| 2006 | ER | Automatic Creation of Web Services from Extraction Ontologies. | Cui Tao, Yihong Ding, Deryle W. Lonsdale |
| 2002 | ER | Automatically Extracting Ontologically Specified Data from HTML Tables of Unknown Structure. | David W. Embley, Cui Tao, Stephen W. Liddle |