| 2026 | SODA | Approximate Light Spanners in Planar Graphs. | Hung Le, Shay Solomon, Cuong Than, Csaba D. Tth, Tianyi Zhang |
| 2025 | STOC | Light Tree Covers, Routing, and Path-Reporting Oracles via Spanning Tree Covers in Doubling Graphs. | Hsien-Chih Chang, Jonathan Conroy, Hung Le, Shay Solomon, Cuong Than |
| 2024 | FOCS | Towards Instance-Optimal Euclidean Spanners. | Hung Le, Shay Solomon, Cuong Than, Csaba D. Tth, Tianyi Zhang |
| 2024 | SODA | Shortcut Partitions in Minor-Free Graphs: Steiner Point Removal, Distance Oracles, Tree Covers, and More. | Hsien-Chih Chang, Jonathan Conroy, Hung Le, Lazar Milenkovic, Shay Solomon, Cuong Than |
| 2023 | FOCS | Covering Planar Metrics (and Beyond): O(1) Trees Suffice. | Hsien-Chih Chang, Jonathan Conroy, Hung Le, Lazar Milenkovic, Shay Solomon, Cuong Than |
| 2023 | FOCS | Optimal Fault-Tolerant Spanners in Euclidean and Doubling Metrics: Breaking the Ω (log n) Lightness Barrier. | Hung Le, Shay Solomon, Cuong Than |
| 2022 | SODA | Greedy Spanners in Euclidean Spaces Admit Sublinear Separators. | Hung Le, Cuong Than |
| 2008 | APBC | SPR-based Tree Reconciliation: Non-binary Trees and Multiple Solutions. | Cuong Than, Luay Nakhleh |
| 2008 | ISMB | Efficient inference of bacterial strain trees from genome-scale multilocus data. | Cuong Than, R. Sugino, Hideki Innan, Luay Nakhleh |
| 2008 | RECOMB | Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer. | Cuong Than, Guohua Jin, Luay Nakhleh |
| 2006 | RECOMB | Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer. | Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nakhleh |