| 2026 | ACL | Protein-STORY: Semantic Text-Oriented Representation Yields biologically meaningful Protein embeddings. | Nabil Ibtehaz, Daisuke Kihara |
| 2025 | AAAI | Vox-UDA: Voxel-wise Unsupervised Domain Adaptation for Cryo-Electron Subtomogram Segmentation with Denoised Pseudo-Labeling. | Haoran Li, Xingjian Li, Jiahua Shi, Huaming Chen, Bo Du, Daisuke Kihara, Johan Barthlemy, Jun Shen, Min Xu |
| 2023 | MICCAI | ACC-UNet: A Completely Convolutional UNet Model for the 2020s. | Nabil Ibtehaz, Daisuke Kihara |
| 2022 | CVPR | On the Importance of Asymmetry for Siamese Representation Learning. | Xiao Wang, Haoqi Fan, Yuandong Tian, Daisuke Kihara, Xinlei Chen |
| 2020 | ICASSP | A Simple But Effective Bert Model for Dialog State Tracking on Resource-Limited Systems. | Tuan Manh Lai, Quan Hung Tran, Trung Bui, Daisuke Kihara |
| 2019 | EMNLP | A Gated Self-attention Memory Network for Answer Selection. | Tuan Manh Lai, Quan Hung Tran, Trung Bui, Daisuke Kihara |
| 2016 | ISIT | The Boltzmann sequence-structure channel. | Abram Magner, Daisuke Kihara, Wojciech Szpankowski |
| 2015 | ITA | Phase transitions in a sequence-structure channel. | Abram Magner, Daisuke Kihara, Wojciech Szpankowski |
| 2013 | SMC | Evaluation of Arterial Stiffness during the Flow-Mediated Dilation Test. | Harutoyo Hirano, Daisuke Kihara, Hiroki Hirano, Yuichi Kurita, Teiji Ukawa, Tsuneo Takayanagi, Haruka Morimoto, Ryuji Nakamura, Noboru Saeki, Yukihito Higashi, Masashi Kawamoto, Masao Yoshizumi, Toshio Tsuji |
| 2007 | BIBE | Tracing Lineage in Multi-version Scientific Databases. | Mingwu Zhang, Daisuke Kihara, Sunil Prabhakar |