| 2026 | AAAI | MUSE: Multi-Scale Dense Self-Distillation for Nucleus Detection and Classification. | Zijiang Yang, Hanqing Chao, Bokai Zhao, Yelin Yang, Yunshuo Zhang, Dongmei Fu, Junping Zhang, Le Lu, Ke Yan, Dakai Jin, Minfeng Xu, Yun Bian, Hui Jiang |
| 2025 | AAAI | Towards a Comprehensive, Efficient and Promptable Anatomic Structure Segmentation Model Using 3D Whole-Body CT Scans. | Heng Guo, Jianfeng Zhang, Jiaxing Huang, Tony C. W. Mok, Dazhou Guo, Ke Yan, Le Lu, Dakai Jin, Minfeng Xu |
| 2025 | ICCV | Harmonyseg: Tubular Structure Segmentation With Deep-Shallow Feature Fusion and Growth-Suppression Balanced Loss. | Yi Huangi, Ke Zhang, Wei Liu, Yuanyuan Wang, Vishal M. Patel, Le Lu, Xu Han, Dakai Jin, Ke Yan |
| 2025 | ICCV | Bridging Local Inductive Bias and Long-Range Dependencies With Pixel-Mamba for End-To-End Whole Slide Image Analysis. | Zhongwei Qiu, Hanqing Chao, Tiancheng Lin, Wanxing Chang, Zijiang Yang, Wenpei Jiao, Yixuan Shen, Yunshuo Zhang, Yelin Yang, Wenbin Liu, Hui Jiang, Yun Bian, Ke Yan, Dakai Jin, Le Lu |
| 2025 | MICCAI | Lymph Node Metastasis Classification with Prototype-Guided Multiple Instance Aggregation and Heterogeneous Feature Fusion. | Haoshen Li, Tashan Ai, Yirui Wang, Zhanghexuan Ji, Qinji Yu, Le Lu, Bin Dong, Li Zhang, Xianghua Ye, Kuaile Zhao, Dakai Jin |
| 2025 | MICCAI | Leveraging Semantic Asymmetry for Accurate Gross Tumor Volume Segmentation of Nasopharyngeal Carcinoma in Planning CT. | Zi Li, Ying Chen, Zeli Chen, Yanzhou Su, Tai Ma, Tony C. W. Mok, Yan-Jie Zhou, Yunhao Bai, Zhilin Zheng, Le Lu, Yirui Wang, Jia Ge, Senxiang Yan, Xianghua Ye, Dakai Jin |
| 2025 | MICCAI | Metastatic Lymph Node Station Classification in Esophageal Cancer via Prior-Guided Supervision and Station-Aware Mixture-of-Experts. | Haoshen Li, Yirui Wang, Qinji Yu, Jie Zhu, Ke Yan, Dazhou Guo, Le Lu, Bin Dong, Li Zhang, Xianghua Ye, Qifeng Wang, Dakai Jin |
| 2025 | MICCAI | Anatomy-Aware Low-Dose CT Denoising via Pretrained Vision Models and Semantic-Guided Contrastive Learning. | Runze Wang, Zeli Chen, Zhiyun Song, Wei Fang, Jiajin Zhang, Danyang Tu, Yuxing Tang, Minfeng Xu, Xianghua Ye, Le Lu, Dakai Jin |
| 2025 | MICCAI | Lymphoma Prognosis with Lesion-Anatomy Context Fusion and Attention-Based Multi-lesion Aggregation. | Song Zhang, Jiajin Zhang, Liheng Qiu, Wei Liu, Dakai Jin, Le Lu, Shenmiao Yang, Ke Yan |
| 2024 | CVPR | Modality-Agnostic Structural Image Representation Learning for Deformable Multi-Modality Medical Image Registration. | Tony C. W. Mok, Zi Li, Yunhao Bai, Jianpeng Zhang, Wei Liu, Yan-Jie Zhou, Ke Yan, Dakai Jin, Yu Shi, Xiaoli Yin, Le Lu, Ling Zhang |
| 2024 | ECCV | Effective Lymph Nodes Detection in CT Scans Using Location Debiased Query Selection and Contrastive Query Representation in Transformer. | Qinji Yu, Yirui Wang, Ke Yan, Haoshen Li, Dazhou Guo, Li Zhang, Na Shen, Qifeng Wang, Xiaowei Ding, Le Lu, Xianghua Ye, Dakai Jin |
| 2024 | MICCAI | Semi-supervised Lymph Node Metastasis Classification with Pathology-Guided Label Sharpening and Two-Streamed Multi-scale Fusion. | Haoshen Li, Yirui Wang, Jie Zhu, Dazhou Guo, Qinji Yu, Ke Yan, Le Lu, Xianghua Ye, Li Zhang, Qifeng Wang, Dakai Jin |
| 2024 | MICCAI | Slice-Consistent Lymph Nodes Detection Transformer in CT Scans via Cross-Slice Query Contrastive Learning. | Qinji Yu, Yirui Wang, Ke Yan, Le Lu, Na Shen, Xianghua Ye, Xiaowei Ding, Dakai Jin |
| 2024 | MICCAI | IHCSurv: Effective Immunohistochemistry Priors for Cancer Survival Analysis in Gigapixel Multi-stain Whole Slide Images. | Yejia Zhang, Hanqing Chao, Zhongwei Qiu, Wenbin Liu, Yixuan Shen, Nishchal Sapkota, Pengfei Gu, Danny Z. Chen, Le Lu, Ke Yan, Dakai Jin, Yun Bian, Hui Jiang |
| 2024 | MICCAI | Low-Rank Continual Pyramid Vision Transformer: Incrementally Segment Whole-Body Organs in CT with Light-Weighted Adaptation. | Vince Zhu, Zhanghexuan Ji, Dazhou Guo, Puyang Wang, Yingda Xia, Le Lu, Xianghua Ye, Wei Zhu, Dakai Jin |
| 2023 | ICCV | Continual Segment: Towards a Single, Unified and Non-forgetting Continual Segmentation Model of 143 Whole-body Organs in CT Scans. | Zhanghexuan Ji, Dazhou Guo, Puyang Wang, Ke Yan, Le Lu, Minfeng Xu, Qifeng Wang, Jia Ge, Mingchen Gao, Xianghua Ye, Dakai Jin |
| 2023 | MICCAI | SAMConvex: Fast Discrete Optimization for CT Registration Using Self-supervised Anatomical Embedding and Correlation Pyramid. | Zi Li, Lin Tian, Tony C. W. Mok, Xiaoyu Bai, Puyang Wang, Jia Ge, Jingren Zhou, Le Lu, Xianghua Ye, Ke Yan, Dakai Jin |
| 2023 | MICCAI | Anatomy-Aware Lymph Node Detection in Chest CT Using Implicit Station Stratification. | Ke Yan, Dakai Jin, Dazhou Guo, Minfeng Xu, Na Shen, Xian-Sheng Hua, Xianghua Ye, Le Lu |
| 2022 | AAAI | Deep Implicit Statistical Shape Models for 3D Medical Image Delineation. | Ashwin Raju, Shun Miao, Dakai Jin, Le Lu, Junzhou Huang, Adam P. Harrison |
| 2022 | MICCAI | Thoracic Lymph Node Segmentation in CT Imaging via Lymph Node Station Stratification and Size Encoding. | Dazhou Guo, Jia Ge, Ke Yan, Puyang Wang, Zhuotun Zhu, Dandan Zheng, Xian-Sheng Hua, Le Lu, Tsung-Ying Ho, Xianghua Ye, Dakai Jin |
| 2022 | MICCAI | DeepCRC: Colorectum and Colorectal Cancer Segmentation in CT Scans via Deep Colorectal Coordinate Transform. | Lisha Yao, Yingda Xia, Haochen Zhang, Jiawen Yao, Dakai Jin, Bingjiang Qiu, Yuan Zhang, Suyun Li, Yanting Liang, Xian-Sheng Hua, Le Lu, Xin Chen, Zaiyi Liu, Ling Zhang |
| 2022 | MICCAI | Effective Opportunistic Esophageal Cancer Screening Using Noncontrast CT Imaging. | Jiawen Yao, Xianghua Ye, Yingda Xia, Jian Zhou, Yu Shi, Ke Yan, Fang Wang, Lili Lin, Haogang Yu, Xian-Sheng Hua, Le Lu, Dakai Jin, Ling Zhang |
| 2021 | MICCAI | DeepStationing: Thoracic Lymph Node Station Parsing in CT Scans Using Anatomical Context Encoding and Key Organ Auto-Search. | Dazhou Guo, Xianghua Ye, Jia Ge, Xing Di, Le Lu, Lingyun Huang, Guotong Xie, Jing Xiao, Zhongjie Lu, Ling Peng, Senxiang Yan, Dakai Jin |
| 2021 | MICCAI | SAME: Deformable Image Registration Based on Self-supervised Anatomical Embeddings. | Fengze Liu, Ke Yan, Adam P. Harrison, Dazhou Guo, Le Lu, Alan L. Yuille, Lingyun Huang, Guotong Xie, Jing Xiao, Xianghua Ye, Dakai Jin |
| 2020 | CVPR | Organ at Risk Segmentation for Head and Neck Cancer Using Stratified Learning and Neural Architecture Search. | Dazhou Guo, Dakai Jin, Zhuotun Zhu, Tsung-Ying Ho, Adam P. Harrison, Chun-Hung Chao, Jing Xiao, Le Lu |
| 2020 | ECCV | JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-modal Image Alignment of Large-Scale Pathological CT Scans. | Fengze Liu, Jinzheng Cai, Yuankai Huo, Chi-Tung Cheng, Ashwin Raju, Dakai Jin, Jing Xiao, Alan L. Yuille, Le Lu, Chien-Hung Liao, Adam P. Harrison |
| 2020 | MICCAI | Lymph Node Gross Tumor Volume Detection in Oncology Imaging via Relationship Learning Using Graph Neural Network. | Chun-Hung Chao, Zhuotun Zhu, Dazhou Guo, Ke Yan, Tsung-Ying Ho, Jinzheng Cai, Adam P. Harrison, Xianghua Ye, Jing Xiao, Alan L. Yuille, Min Sun, Le Lu, Dakai Jin |
| 2020 | MICCAI | Robust Pancreatic Ductal Adenocarcinoma Segmentation with Multi-institutional Multi-phase Partially-Annotated CT Scans. | Ling Zhang, Yu Shi, Jiawen Yao, Yun Bian, Kai Cao, Dakai Jin, Jing Xiao, Le Lu |
| 2020 | MICCAI | Lymph Node Gross Tumor Volume Detection and Segmentation via Distance-Based Gating Using 3D CT/PET Imaging in Radiotherapy. | Zhuotun Zhu, Dakai Jin, Ke Yan, Tsung-Ying Ho, Xianghua Ye, Dazhou Guo, Chun-Hung Chao, Jing Xiao, Alan L. Yuille, Le Lu |
| 2019 | MICCAI | Accurate Esophageal Gross Tumor Volume Segmentation in PET/CT Using Two-Stream Chained 3D Deep Network Fusion. | Dakai Jin, Dazhou Guo, Tsung-Ying Ho, Adam P. Harrison, Jing Xiao, Chen-Kan Tseng, Le Lu |
| 2019 | MICCAI | Deep Esophageal Clinical Target Volume Delineation Using Encoded 3D Spatial Context of Tumors, Lymph Nodes, and Organs At Risk. | Dakai Jin, Dazhou Guo, Tsung-Ying Ho, Adam P. Harrison, Jing Xiao, Chen-Kan Tseng, Le Lu |
| 2019 | MICCAI | Weakly Supervised Universal Fracture Detection in Pelvic X-Rays. | Yirui Wang, Le Lu, Chi-Tung Cheng, Dakai Jin, Adam P. Harrison, Jing Xiao, Chien-Hung Liao, Shun Miao |
| 2018 | MICCAI | CT-Realistic Lung Nodule Simulation from 3D Conditional Generative Adversarial Networks for Robust Lung Segmentation. | Dakai Jin, Ziyue Xu, Youbao Tang, Adam P. Harrison, Daniel J. Mollura |
| 2017 | MICCAI | Pathological Pulmonary Lobe Segmentation from CT Images Using Progressive Holistically Nested Neural Networks and Random Walker. | Kevin George, Adam P. Harrison, Dakai Jin, Ziyue Xu, Daniel J. Mollura |
| 2017 | MICCAI | 3D Convolutional Neural Networks with Graph Refinement for Airway Segmentation Using Incomplete Data Labels. | Dakai Jin, Ziyue Xu, Adam P. Harrison, Kevin George, Daniel J. Mollura |
| 2016 | ACCV | Segmentation of Trabecular Bone for In Vivo CT Imaging Using a Novel Approach of Computing Spatial Variation in Bone and Marrow Intensities. | Cheng Chen, Dakai Jin, Xiaoliu Zhang, Steven M. Levy, Punam K. Saha |
| 2016 | ACCV | A Novel Iterative Method for Airway Tree Segmentation from CT Imaging Using Multiscale Leakage Detection. | Syed Ahmed Nadeem, Dakai Jin, Eric A. Hoffman, Punam K. Saha |
| 2015 | ICIAP | Filtering Non-Significant Quench Points Using Collision Impact in Grassfire Propagation. | Dakai Jin, Cheng Chen, Punam K. Saha |
| 2015 | ISVC | Fuzzy Skeletonization Improves the Performance of Characterizing Trabecular Bone Micro-architecture. | Cheng Chen, Dakai Jin, Punam K. Saha |
| 2014 | ICPR | A New Approach of Arc Skeletonization for Tree-like Objects Using Minimum Cost Path. | Dakai Jin, Krishna S. Iyer, Eric A. Hoffman, Punam K. Saha |
| 2014 | ISVC | Volumetric Topological Analysis on In Vivo Trabecular Bone Magnetic Resonance Imaging. | Cheng Chen, Dakai Jin, Yinxiao Liu, Felix W. Wehrli, Gregory Chang, Peter J. Snyder, Ravinder R. Regatte, Punam K. Saha |
| 2014 | ISVC | Automated Assessment of Pulmonary Arterial Morphology in Multi-row Detector CT Imaging Using Correspondence with Anatomic Airway Branches. | Dakai Jin, Krishna S. Iyer, Eric A. Hoffman, Punam K. Saha |
| 2013 | ICIAP | A New Fuzzy Skeletonization Algorithm and Its Applications to Medical Imaging. | Dakai Jin, Punam K. Saha |
| 2013 | ICIAP | A New Algorithm for Cortical Bone Segmentation with Its Validation and Applications to In Vivo Imaging. | Cheng Li, Dakai Jin, Trudy L. Burns, James C. Torner, Steven M. Levy, Punam K. Saha |