| 2022 | CEC | Evolving Neural Networks for a Generalized Divide the Dollar Game. | Garrison W. Greenwood, Daniel A. Ashlock |
| 2022 | CIBCB | Local Bubble Dilation Functions: Hypersphere-bounded Landscape Deformations Simplify Global Optimization. | Daniele M. Papetti, Vasco Coelho, Daniel A. Ashlock, Paolo Cazzaniga, Simone Spolaor, Daniela Besozzi, Marco S. Nobile |
| 2021 | CEC | If You Can't Beat It, Squash It: Simplify Global Optimization by Evolving Dilation Functions. | Daniele M. Papetti, Daniel A. Ashlock, Paolo Cazzaniga, Daniela Besozzi, Marco S. Nobile |
| 2021 | CEC | Necrotic Behavioral Control of Agent Behavior in the Iterated Prisoner's Dilemma. | Amanda Saunders, Daniel A. Ashlock, Julie Greensmith |
| 2021 | CIBCB | Ring Optimization of Epidemic Contact Networks. | Daniel A. Ashlock, Joseph Alexander Brown, Wendy Ashlock, Michael Dub |
| 2021 | CIBCB | One Moose, Two Moose, Three Fields, More? | Daniel A. Ashlock, Joseph Alexander Brown, Sheridan K. Houghten, Munir Makhmutov |
| 2021 | CIBCB | A Comparison of Novel Representations for Evolving Epidemic Networks. | Daniel A. Ashlock, Michael Dub |
| 2020 | CEC | Necrotic Control of the Aesthetics of Evolved Art. | Daniel A. Ashlock, Julie Greensmith |
| 2020 | CEC | Evolutionary Graph Compression and Diffusion Methods for City Discovery in Role Playing Games. | Joseph Alexander Brown, Daniel A. Ashlock, Sheridan K. Houghten, Angelo Romualdo |
| 2020 | CEC | Clustering Julia Set Examples to Enhance Evolution of Fractal Parameters. | Andrew Dong, Daniel A. Ashlock |
| 2020 | CEC | Modelling of Vaccination Strategies for Epidemics using Evolutionary Computation. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2020 | CEC | Which random is the best random? A study on sampling methods in Fourier surrogate modeling. | Marco S. Nobile, Simone Spolaor, Paolo Cazzaniga, Daniele M. Papetti, Daniela Besozzi, Daniel A. Ashlock, Luca Manzoni |
| 2020 | CIBCB | Odd Distance Anchors for Rapid Clustering. | Daniel A. Ashlock, Haiyang Chang, Matthew Stoodley |
| 2020 | CIBCB | Evolving the Curve. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock, James Alexander Hughes |
| 2020 | CIBCB | Vaccinating a Population is a Programming Problem. | James Alexander Hughes, Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2019 | CEC | A Greedy, Generative, Lattice Representation for Point Packing. | Daniel A. Ashlock, Jeremy Gilbert |
| 2019 | CEC | Applying an Adaptive Generative Representation to the Investigation of Affordances in Puzzles. | Daniel A. Ashlock, James Montgomery |
| 2019 | CEC | Modelling Standard Work with Simple Virtual Agents. | Daniel A. Ashlock, Amanda Saunders, James Marshall, David Calder |
| 2019 | CEC | Parameter Tuning of a Peak Fitting Algorithm with an Evolved Experimental Design. | Rachel Brown, Daniel A. Ashlock |
| 2019 | CEC | Representation for Evolution of Epidemic Models. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2019 | CEC | Dilation Functions in Global Optimization. | Marco S. Nobile, Paolo Cazzaniga, Daniel A. Ashlock |
| 2019 | CIBCB | Implementing Phenotypic Plasticity with an Adaptive Generative Representation. | Daniel A. Ashlock, Wendy Ashlock, James Montgomery |
| 2019 | CIBCB | Large Block Matching Characters for Dehydrin Classification. | Daniel A. Ashlock, Sierra Gillis, Amanda Saunders, Andrew Riley |
| 2019 | CIBCB | Pandemic: A Graph Evolution Story. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2018 | CEC | Exploiting Fertility to Enable Automatic Content Generation to Ameliorate User Fatigue in Interactive Evolutionary Computation. | Daniel A. Ashlock, Joseph Alexander Brown, Lolita Sultanaeva |
| 2018 | CEC | Two Population Studies of Evolving Game Playing Agents. | Daniel A. Ashlock, Eun-Youn Kim |
| 2018 | CEC | On the Evolution of Fairness in N-player Ultimatum Games. | Garrison W. Greenwood, Daniel A. Ashlock |
| 2018 | CIBCB | Parameter selection for modeling of epidemic networks. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2018 | CIBCB | Hierarchical clustering and tree stability. | Amanda Saunders, Daniel A. Ashlock, Sheridan K. Houghten |
| 2018 | CIBCB | Data driven point packing for fast clustering. | Matthew Stoodley, Daniel A. Ashlock, Steffen Graether |
| 2017 | CEC | Modeling undependable subsidies with three-player generalized divide the dollar. | Daniel A. Ashlock, Garrison W. Greenwood |
| 2017 | CEC | Evolutionary design of FRAX decks. | Daniel A. Ashlock, Andrew McEachern |
| 2017 | CEC | Applying the biased form of the adaptive generative representation. | James Montgomery, Daniel A. Ashlock |
| 2017 | CIBCB | A note on population size inspired by the extinction of mammoths. | Daniel A. Ashlock, Wendy Ashlock |
| 2017 | CIBCB | Infinite string block matching features for DNA classification. | Daniel A. Ashlock, Sierra Gillis, Wendy Ashlock |
| 2017 | CIBCB | Hybridization and ring optimization for larger sets of embeddable biomarkers. | Daniel A. Ashlock, Sheridan K. Houghten |
| 2017 | CIBCB | A novel representation for boolean networks designed to enhance heritability and scalability. | Daniel A. Ashlock, Gonzalo A. Ruz |
| 2017 | CIBCB | Inferring bistable lac operen Boolean regulatory networks using evolutionary computation. | Gonzalo A. Ruz, Daniel A. Ashlock, Thomas Ledger, Eric Goles |
| 2016 | CEC | Evolutionary partitioning regression with function stacks. | Daniel A. Ashlock, Joseph Alexander Brown |
| 2016 | CEC | Generalized divide the dollar. | Daniel A. Ashlock, Garrison W. Greenwood |
| 2016 | CEC | Conway crossover to create hyperdimensional point packings, with applications. | Daniel A. Ashlock, Steffen Graether |
| 2016 | CEC | The do what's possible representation. | Daniel A. Ashlock, Sierra Gillis, Andrew McEachern, Jeffrey Tsang |
| 2016 | CEC | The impact of elite fraction and population size on evolved iterated prisoner's dilemma agents. | Daniel A. Ashlock, Eun-Youn Kim |
| 2016 | CEC | An adaptive generative representation for evolutionary computation. | Daniel A. Ashlock, James Montgomery |
| 2016 | CEC | Evolving polyomino puzzles. | Daniel A. Ashlock, Lauren Taylor |
| 2016 | CEC | Adding local edge mobility to graph evolution. | Daniel A. Ashlock, Meghan Timmins |
| 2016 | CEC | Evolvable warps for data normalization. | Jeremy Gilbert, Daniel A. Ashlock |
| 2016 | CIBCB | Revisiting epidemic network evolution with a new representation. | Meghan Timmins, Daniel A. Ashlock |
| 2015 | CEC | A class of representations for evolving graphs. | Daniel A. Ashlock, Lee-Ann Barlow |
| 2015 | CEC | Ring optimization with extinction. | Daniel A. Ashlock, Sierra Gillis, Gary B. Fogel |
| 2015 | CEC | Evolving fractal art with a directed acyclic graph genetic programming representation. | Daniel A. Ashlock, Jeffrey Tsang |
| 2015 | CEC | Evolution of 2D apoptotic cellular automata. | Jennifer Garner, Daniel A. Ashlock |
| 2015 | CEC | Flow of control in linear genetic programming. | Justin Schonfeld, Daniel A. Ashlock |
| 2015 | CIBCB | Evolving DNA classifiers with extinction based ring optimization. | Daniel A. Ashlock, Sierra Gillis, Jennifer Garner, Gary B. Fogel |
| 2015 | CIBCB | Lexicode crossover for embeddable biomarkers. | Daniel A. Ashlock, Sheridan K. Houghten |
| 2015 | CIBCB | Chaos automata for sequence visualization. | Daniel A. Ashlock, Cameron McGuinness, Wendy Ashlock |
| 2015 | CIBCB | Interactive evolution instead of default parameters. | Daniel A. Ashlock, Cameron McGuinness, Joseph O'Neill |
| 2015 | CIBCB | A comparison of incremental community assembly with evolutionary community selection. | Daniel A. Ashlock, Meghan Timmins |
| 2015 | CIBCB | Varying decision inputs in Prisoner's Dilemma. | Lee-Ann Barlow, Daniel A. Ashlock |
| 2015 | CIBCB | Stress and productivity performance in the workforce modelled with binary decision automata. | Matthew Page, Daniel A. Ashlock |
| 2014 | CEC | ∗Tego - A framework for adversarial planning. | Daniel A. Ashlock, Philip Hingston |
| 2014 | CIBCB | Agent-based modelling of resource flow in plant networks. | Daniel A. Ashlock, Asena Goren |
| 2014 | CIBCB | Recentering and Restarting Genetic Algorithm variations for DNA Fragment Assembly. | James Alexander Hughes, Sheridan K. Houghten, Guillermo M. Malln-Fullerton, Daniel A. Ashlock |
| 2014 | CIBCB | Using associators to generate ensemble biclustering from multiple evolved biclusterings. | Eun-Youn Kim, Daniel A. Ashlock |
| 2014 | CIBCB | Shape control of side effect machines for DNA classification. | Andrew McEachern, Daniel A. Ashlock |
| 2013 | CEC | Functions for the analysis of exploration and exploitation. | Daniel A. Ashlock, Nikola Krsic, Gary B. Fogel |
| 2013 | CEC | Evolutionary cellular automata bonsai. | Daniel A. Ashlock, Carolyn Pugh |
| 2013 | CEC | Edit metric decoding: Representation strikes back. | James Alexander Hughes, Joseph A. Brown, Sheridan K. Houghten, Daniel A. Ashlock |
| 2013 | CEC | Woven string kernels for DNA sequence classification. | Andrew McEachern, Daniel A. Ashlock |
| 2013 | CEC | Binary decision automata modelling stress in the workplace. | Matthew Page, Daniel A. Ashlock |
| 2012 | CEC | Impact of regulatory genes on optimization behavior. | Daniel A. Ashlock, Wendy Ashlock |
| 2012 | CEC | Single parent generalization of cellular automata rules. | Daniel A. Ashlock, Sharon McNicholas |
| 2012 | CEC | Evolutionary games and the study of cooperation: Why has so little progress been made? | Garrison W. Greenwood, Daniel A. Ashlock |
| 2012 | CIBCB | Evolving a social fabric to fit and epidemic profile. | Daniel A. Ashlock, Elisabeth Shiller |
| 2012 | CIBCB | A model of competitive exclusion in plants. | Daniel A. Ashlock, Erin Wild |
| 2011 | CEC | Fitness functions for searching the Mandelbrot set. | Daniel A. Ashlock, Joseph A. Brown |
| 2011 | CEC | Shopkeeper strategies in the iterated prisoner's dilemma. | Daniel A. Ashlock, Christopher Kuusela, Monica Cojocaru |
| 2011 | CEC | Financial control of the evolution of autonomous non-player characters. | Daniel A. Ashlock, Sylvia Nguyen |
| 2011 | CEC | Comparison of evolved epidemic networks with diffusion characters. | Daniel A. Ashlock, Elisabeth Shiller, Colin Lee |
| 2011 | CEC | Translation tables: A genetic code in a evolutionary algorithm. | Daniel A. Ashlock, Justin Schonfeld, Paul D. McNicholas |
| 2011 | CEC | Autogeneration of fractal photographic mosaic images. | Joseph A. Brown, Daniel A. Ashlock, John Orth, Sheridan K. Houghten |
| 2011 | CEC | Decomposing the level generation problem with tiles. | Cameron McGuinness, Daniel A. Ashlock |
| 2011 | CIBCB | Designing artificial organisms for use in biological simulations. | Wendy Ashlock, Daniel A. Ashlock |
| 2011 | CIBCB | A simulation of bacterial communities. | Daniel A. Ashlock, Andrew McEachern |
| 2011 | CIBCB | Fitting contact networks to epidemic behavior with an evolutionary algorithm. | Daniel A. Ashlock, Elisabeth Shiller |
| 2010 | CEC | Virtual retroviruses in grid walkers: Effects on genome organization. | Wendy Ashlock, Daniel A. Ashlock |
| 2010 | CEC | Evolution for automatic assessment of the difficulty of sokoban boards. | Daniel A. Ashlock, Justin Schonfeld |
| 2010 | CIBCB | Nearest neighbor training of side effect machines for sequence classification. | Daniel A. Ashlock, Andrew McEachern |
| 2010 | CIBCB | Side effect machines for quaternary edit metric decoding. | Joseph A. Brown, Sheridan K. Houghten, Daniel A. Ashlock |
| 2009 | CEC | Robustness in evolved grid structures. | Daniel A. Ashlock, Justin Schonfeld, James Humphrey |
| 2009 | CEC | Evolved art via control of cellular automata. | Daniel A. Ashlock, Jeffrey Tsang |
| 2009 | CIBCB | Simulation of the impact of retroviruses on genome organization of an artificial organism. | Daniel A. Ashlock, Wendy Ashlock |
| 2009 | CIBCB | DNA error correcting codes: No crossover. | Daniel A. Ashlock, Sheridan K. Houghten |
| 2009 | CIBCB | Diagnostic character location within the cryptic skipper butterfly species complex with an evolutionary algorithm. | Daniel A. Ashlock, Taika von Knigslw |
| 2009 | CIBCB | Using diffusion characters for the taxonomy of self-organizing social networks. | Daniel A. Ashlock, Colin Lee |
| 2008 | CEC | Small population effects and hybridization. | Daniel A. Ashlock, Kenneth Mark Bryden, Steven M. Corns |
| 2008 | CEC | The geometry of Tartarus fitness cases. | Daniel A. Ashlock, Elizabeth Warner |
| 2008 | CEC | Behavioral regimes in the evolution of extremal epidemic graphs. | Daniel A. Ashlock, Fatemeh Jafargholi |
| 2008 | CEC | Evolution of artificial ring species. | Daniel A. Ashlock, Taika von Konigslow |
| 2007 | CEC | Fingerprint analysis of the noisy prisoner's dilemma. | Daniel A. Ashlock, Eun-Youn Kim, Wendy Ashlock |
| 2007 | CEC | A fractal representation for real optimization. | Daniel A. Ashlock, Justin Schonfeld |
| 2006 | CEC | Evolutionary Exploration of the Mandelbrot Set. | Daniel A. Ashlock |
| 2006 | CEC | Changes in Prisoner's Dilemma Strategies Over Evolutionary Time With Different Population Sizes. | Wendy Ashlock, Daniel A. Ashlock |
| 2006 | CEC | An Updated Taxonomy of Evolutionary Computation Problems using Graph-based Evolutionary Algorithms. | Daniel A. Ashlock, Kenneth Mark Bryden, Steven M. Corns, Justin Schonfeld |
| 2006 | CEC | Simultaneous Evolution of Bracketed L-system Rules and Interpretation. | Daniel A. Ashlock, Kenneth M. Bryden, Stephen P. Gent |
| 2006 | CEC | Non-photorealistic Rendering of Images as Evolutionary Stained Glass. | Daniel A. Ashlock, Balu Karthikeyan, Kenneth M. Bryden |
| 2006 | CEC | Evolving A Diverse Collection of Robot Path Planning Problems. | Daniel A. Ashlock, Theodore W. Manikas, Kaveh Ashenayi |
| 2006 | CEC | Improving Design Diversity Using Graph Based Evolutionary Algorithms. | Steven M. Corns, Daniel A. Ashlock, Douglas S. McCorkle, Kenneth Mark Bryden |
| 2006 | CEC | Generalized Thermal Agents with Multiple Boundary Conditions and Three-Dimensional Thermal Agents. | Stephen P. Gent, Daniel A. Ashlock, Allan R. Willms, Kenneth M. Bryden |
| 2006 | CEC | AMoEBA Image Segmentation: Modeling of Individual Voronoi Tessellations. | Nathan G. Johnson, Balu Karthikeyan, Daniel A. Ashlock, Kenneth M. Bryden |
| 2006 | CEC | Evaluating Distance Measures for RNA Motif Search. | Justin Schonfeld, Daniel A. Ashlock |
| 2005 | CEC | Rapid training of thermal agents with single parent genetic programming. | Daniel A. Ashlock, Kenneth Mark Bryden, Wendy Ashlock, Stephen P. Gent |
| 2005 | CEC | Graph based evolutionary algorithms enhance the identification of Steiner systems. | Daniel A. Ashlock, Kenneth Mark Bryden, Steven M. Corns |
| 2005 | CEC | Evolution of L-systems for compact virtual landscape generation. | Daniel A. Ashlock, Stephen P. Gent, Kenneth Mark Bryden |
| 2005 | CEC | Non-local adaptation of artificial predators and prey. | Daniel A. Ashlock, Adam Sherk |
| 2005 | CEC | On the effects of representation on evolving grid robots. | Steven M. Corns, Daniel A. Ashlock, Kenneth Mark Bryden, David Muth Jr. |
| 2005 | CEC | Solution transfer rates in graph based evolutionary algorithms. | Steven M. Corns, Kenneth Mark Bryden, Daniel A. Ashlock |
| 2005 | CIBCB | A Novel Variation Operator for More Rapid Evolution of DNA Error Correcting Codes. | Daniel A. Ashlock, Sheridan K. Houghten |
| 2005 | CIBCB | Depth Annotation of RNA Folds for Secondary Structure Motif Search. | Daniel A. Ashlock, Justin Schonfeld |
| 2005 | CIBCB | Selection of Genetically Diverse Recombinant Inbreds with an Ordered Gene Evolutionary Algorithm. | Daniel A. Ashlock, Ruth Swanson, Patrick S. Schnable |
| 2005 | GECCO | The impact of cellular representation on finite state agents for prisoner's dilemma. | Daniel A. Ashlock, Eun-Youn Kim |
| 2005 | GECCO | A study of evolutionary robustness in stochastically tiled polyominos. | Justin Schonfeld, Daniel A. Ashlock |
| 2004 | CEC | An application of graph based evolutionary algorithms for diversity preservation. | Kenneth M. Bryden, Daniel A. Ashlock, Douglas S. McCorkle |
| 2004 | CEC | A comparison of the robustness of evolutionary computation and random walks. | Justin Schonfeld, Daniel A. Ashlock |
| 2004 | CEC | Quantitative trait loci based solution of an inverse radiation heat transfer problem. | Sunil Suram, Kenneth M. Bryden, Daniel A. Ashlock |
| 2004 | CIBCB | A comparison of evolved finite state classifiers and interpolated Markov models for improving PCR primer design. | Daniel A. Ashlock, Scott J. Emrich, Kenneth Mark Bryden, Steven M. Corns, Tsui-Jung Wen, Patrick S. Schnable |
| 2003 | CEC | Thermal agents: an application of genetic programming to virtual engineering. | Daniel A. Ashlock, Kenneth M. Bryden |
| 2002 | CEC | Greedy closure evolutionary algorithms. | Daniel A. Ashlock, Ling Guo, Fang Qiu |
| 1999 | CEC | Texture synthesis with tandem genetic algorithms using nonparametric partially ordered Markov models. | Daniel A. Ashlock, Jennifer L. Davidson |