| 2017 | RECOMB | Fast Heuristics for Resolving Weakly Supported Branches Using Duplication, Transfers, and Losses. | Han Lai, Maureen Stolzer, Dannie Durand |
| 2007 | APBC | Two Plus Two Does not Equal Three: Statistical Tests for Multiple Genome Comparison. | Narayanan Raghupathy, Rose Hoberman, Dannie Durand |
| 2006 | RECOMB | Domain Architecture in Homolog Identification. | Nan Song, R. D. Sedgewick, Dannie Durand |
| 2005 | RECOMB | A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. | Dannie Durand, Bjarni V. Halldrsson, Benjamin Vernot |
| 2005 | RECOMB | The Incompatible Desiderata of Gene Cluster Properties. | Rose Hoberman, Dannie Durand |
| 2005 | RECOMB | Graph Theoretical Insights into Evolution of Multidomain Proteins. | Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand |
| 2005 | RECOMB | Individual Gene Cluster Statistics in Noisy Maps. | Narayanan Raghupathy, Dannie Durand |
| 2004 | RECOMB | The Statistical Significance of Max-Gap Clusters. | Rose Hoberman, David Sankoff, Dannie Durand |
| 2002 | RECOMB | Tests for gene clustering. | Dannie Durand, David Sankoff |
| 2000 | RECOMB | Notung: dating gene duplications using gene family trees. | Kevin C. Chen, Dannie Durand, Martin Farach-Colton |
| 1995 | SPAA | Applying Randomized Edge Coloring Algorithms to Distributed Communication: An Experimental Study. | Dannie Durand, Ravi Jain, David Tseytlin |
| 1993 | ICPP | Impact of Memory Contention on Dynamic Scheduling on NUMA Multiprocessors. | Dannie Durand, Thierry Montaut, Lionel Kervella, William Jalby |