| 2025 | IJCNN | Certifying Adapters: Enabling and Enhancing the Certification of Classifier Adversarial Robustness. | Jieren Deng, Hanbin Hong, Aaron Palmer, Xin Zhou, Jinbo Bi, Kaleel Mahmood, Yuan Hong, Derek Aguiar |
| 2024 | ICASSP | GBSD: Generative Bokeh with Stage Diffusion. | Jieren Deng, Xin Zhou, Hao Tian, Zhihong Pan, Derek Aguiar |
| 2023 | ICIP | Smooth and Stepwise Self-Distillation for Object Detection. | Jieren Deng, Xin Zhou, Hao Tian, Zhihong Pan, Derek Aguiar |
| 2023 | ICLR | Auto-Encoding Goodness of Fit. | Aaron Palmer, Zhiyi Chi, Derek Aguiar, Jinbo Bi |
| 2021 | ICAIL | Case-level prediction of motion outcomes in civil litigation. | Devin J. McConnell, James Zhu, Sachin S. Pandya, Derek Aguiar |
| 2014 | PSB | Tumor Haplotype Assembly Algorithms for Cancer Genomics. | Derek Aguiar, Wendy S. W. Wong, Sorin Istrail |
| 2014 | RECOMB | Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts. | Derek Aguiar, Eric M. Morrow, Sorin Istrail |
| 2011 | PSB | Haplotype Phasing By Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants. | Bjarni V. Halldrsson, Derek Aguiar, Sorin Istrail |
| 2010 | RECOMB | The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. | Bjarni V. Halldrsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail |