| 2019 | AMIA | SemMedDB-neo4j: A Graph Database of Biomedical Semantic Relations. | Dimitar Hristovski, Andrej Kastrin, Halil Kilicoglu |
| 2018 | AMIA | Towards using Literature-based Discovery for Interpretation of Next Generation Sequencing Results. | Dimitar Hristovski, Gaber Bergant, Andrej Kastrin, Borut Peterlin |
| 2017 | AMIA | Evolution of Research Topics in MEDLINE. | Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski |
| 2016 | AMIA | Implementing Semantics-Based Cross-domain Collaboration Recommendation in Biomedicine with a Graph Database. | Dimitar Hristovski, Andrej Kastrin, Thomas C. Rindflesch |
| 2014 | DIS | Link Prediction on the Semantic MEDLINE Network - An Approach to Literature-Based Discovery. | Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski |
| 2013 | AMIA | Preliminary Evaluation of a Literature-based Discovery Method for Explaining Drug Adverse Effects. | Dimitar Hristovski, Anita Burgun-Parenthoine, Paul Avillach, Thomas C. Rindflesch |
| 2012 | AMIA | Using Literature-based Discovery to Explain Drug Adverse Effects. | Dimitar Hristovski, Anita Burgun, Paul Avillach, Thomas C. Rindflesch |
| 2009 | AMIA | Semantic Relations for Interpreting DNA Microarray Data. | Dimitar Hristovski, Andrej Kastrin, Borut Peterlin, Thomas C. Rindflesch |
| 2008 | AMIA | A Fast Document Classification Algorithm for Gene Symbol Disambiguation in the BITOLA Literature-Based Discovery Support System. | Andrej Kastrin, Dimitar Hristovski |
| 2008 | ISMB | Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation. | Dimitar Hristovski, Andrej Kastrin, Borut Peterlin, Thomas C. Rindflesch |
| 2007 | AMIA | Using the Literature-Based Discovery Paradigm to Investigate Drug Mechanisms. | Caroline B. Ahlers, Dimitar Hristovski, Halil Kilicoglu, Thomas C. Rindflesch |
| 2006 | AMIA | Exploiting Semantic Relations for Literature-Based Discovery. | Dimitar Hristovski, Carol Friedman, Thomas C. Rindflesch, Borut Peterlin |
| 2003 | AMIA | Semantic Relations Asserting the Etiology of Genetic Diseases. | Thomas C. Rindflesch, Bisharah Libbus, Dimitar Hristovski, Alan R. Aronson, Halil Kilicoglu |
| 2001 | AMIA | Literature-based Discovery Support System and Its Application to Disease Gene Identification. | Dimitar Hristovski, Borut Peterlin, Saso Dzeroski |
| 2000 | AMIA | Using data mining and OLAP to discover patterns in a database of patients with Y-chromosome deletions. | Saso Dzeroski, Dimitar Hristovski, Borut Peterlin |
| 1997 | AMIA | Organizing Slovene Medical Bibliography on the World Wide Web. | Dimitar Hristovski, Anamarija Rozic-Hristovski |