| 2008 | SDM | Learning Markov Network Structure using Few Independence Tests. | Parichey Gandhi, Facundo Bromberg, Dimitris Margaritis |
| 2007 | IJCAI | Efficient and Robust Independence-Based Markov Network Structure Discovery. | Facundo Bromberg, Dimitris Margaritis |
| 2006 | SDM | Efficient Markov Network Structure Discovery using Independence Tests. | Facundo Bromberg, Dimitris Margaritis, Vasant G. Honavar |
| 2005 | AAAI | Distribution-Free Learning of Bayesian Network Structure in Continuous Domains. | Dimitris Margaritis |
| 2005 | ICDM | Speculative Markov Blanket Discovery for Optimal Feature Selection. | Sandeep Yaramakala, Dimitris Margaritis |
| 2001 | UAI | A Bayesian Multiresolution Independence Test for Continuous Variables. | Dimitris Margaritis, Sebastian Thrun |
| 2001 | VLDB | NetCube: A Scalable Tool for Fast Data Mining and Compression. | Dimitris Margaritis, Christos Faloutsos, Sebastian Thrun |
| 2000 | ICIP | Image Retrieval with Local and Spatial Queries. | Baback Moghaddam, Henning Biermann, Dimitris Margaritis |
| 1998 | AAAI | Template-Based Recognition of Pose and Motion Gestures On a Mobile Robot. | Stefan Waldherr, Sebastian Thrun, Roseli A. F. Romero, Dimitris Margaritis |
| 1998 | ICML | Learning to Locate an Object in 3D Space from a Sequence of Camera Images. | Dimitris Margaritis, Sebastian Thrun |
| 1998 | ICPADS | Design, Implementation, and Evaluation of a Parallel Index Server for Shape Image Database. | Tzi-cker Chiueh, Dimitris Margaritis, Srinidhi Varadarajan |
| 1995 | FOCS | Reconstructing Strings from Substrings in Rounds. | Dimitris Margaritis, Steven Skiena |
| 1994 | ENTER | MaTourA: Multi-agent Tourist Advisor. | Constantin Halatsis, Panagiotis Stamatopoulos, Isambo Karali, Costantinos Mourlas, Dimitris Gouscos, Dimitris Margaritis, Constantin Fouskakis, Angelos Kolokouris, Panagiotis Xinos, Mike Reeve, Andr Vron, Kees Schuerman, Liang-Liang Li |
| 1994 | SAC | Extending a parallel CLP language to support the development of multi-agent systems. | Panagiotis Stamatopoulos, Dimitris Margaritis, Constantin Halatsis |