| 2024 | ICML | Physics and Lie symmetry informed Gaussian processes. | David Dalton, Dirk Husmeier, Hao Gao |
| 2023 | WACV | The Fully Convolutional Transformer for Medical Image Segmentation. | Athanasios Tragakis, Chaitanya Kaul, Roderick Murray-Smith, Dirk Husmeier |
| 2018 | AISTATS | Multiphase MCMC Sampling for Parameter Inference in Nonlinear Ordinary Differential Equations. | Alan Lazarus, Dirk Husmeier, Theodore Papamarkou |
| 2016 | ICML | Fast Parameter Inference in Nonlinear Dynamical Systems using Iterative Gradient Matching. | Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier |
| 2015 | ICML | Controversy in mechanistic modelling with Gaussian processes. | Benn Macdonald, Catherine F. Higham, Dirk Husmeier |
| 2014 | AISTATS | Sparse Bayesian Variable Selection for the Identification of Antigenic Variability in the Foot-and-Mouth Disease Virus. | Vinny Davies, Richard E. Reeve, William T. Harvey, Francois F. Maree, Dirk Husmeier |
| 2013 | AISTATS | Reconstructing ecological networks with hierarchical Bayesian regression and Mondrian processes. | Andrej Aderhold, Dirk Husmeier, V. Anne Smith |
| 2013 | AISTATS | ODE parameter inference using adaptive gradient matching with Gaussian processes. | Frank Dondelinger, Dirk Husmeier, Simon Rogers, Maurizio Filippone |
| 2010 | ICML | Heterogeneous Continuous Dynamic Bayesian Networks with Flexible Structure and Inter-Time Segment Information Sharing. | Frank Dondelinger, Sophie Lbre, Dirk Husmeier |
| 2005 | ECCB | Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models. | Dirk Husmeier |
| 2005 | RECOMB | Probabilistic | Wolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams |
| 2002 | ISMB | Detecting recombination with MCMC. | Dirk Husmeier, Grinne McGuire |
| 2001 | ISMB | Probabilistic divergence measures for detecting interspecies recombination. | Dirk Husmeier, Frank Wright |
| 1999 | IJCNN | Neural networks for predicting Kaposi's sarcoma. | Dirk Husmeier, Gillian S. Patton, Myra O. McClure, John R. W. Harris, Stephen J. Roberts |
| 1997 | ICANN | Modeling Conditional Probabilities with Committees of RVFL Networks. | Dirk Husmeier, John G. Taylor |