| 2019 | ICIS | Using Agent-Based Modelling to Address Malicious Behavior on Social Media. | Agnieszka Onuchowska, Donald J. Berndt |
| 2018 | ICSE | Technical debt-related information asymmetry between finance and IT. | Thomas Stablein, Donald J. Berndt, Matthew Mullarkey |
| 2016 | CIKM | Agent-Based Models of the Corporate Bond Market. | Donald J. Berndt, David Boogers, James A. McCart |
| 2013 | AMIA | Evaluating Information Retrieval Approaches on Heterogeneous Clinical Notes. | James A. McCart, Donald J. Berndt, Philip Foulis, Richard Martinello, Stephen Luther |
| 2012 | AMIA | Extracting Semi-Structured Text Elements in Medical Progress Notes: A Machine Learning Approach. | Dezon Finch, Donald J. Berndt |
| 2012 | AMIA | Automated Rule Development Using Text Mining. | Jay Jarman, James A. McCart, Stephen Luther, Donald J. Berndt |
| 2012 | AMIA | Using Statistical Text Mining to Identify Falls in VHA Ambulatory Care Data. | James A. McCart, Donald J. Berndt, Dezon Finch, Jay Jarman, Stephen Luther |
| 2012 | ICIS | SiteWit Corporation: SQL or NoSQL that is the Question. | Donald J. Berndt, Ricardo Lasa, James A. McCart |
| 2006 | ISI | Naturally Occurring Incidents as Facsimiles for Biochemical Terrorist Attacks. | Jamie L. Griffiths, Donald J. Berndt, Alan R. Hevner |
| 2004 | ISI | Data Analytics for Bioterrorism Surveillance. | Donald J. Berndt, Sunil Bhat, John W. Fisher, Alan R. Hevner, James Studnicki |
| 2003 | ISI | Bioterrorism Surveillance with Real-Time Data Warehousing. | Donald J. Berndt, Alan R. Hevner, James Studnicki |
| 1998 | AMIA | CATCH/IT: a data warehouse to support comprehensive assessment for tracking community health. | Donald J. Berndt, Alan R. Hevner, James Studnicki |
| 1994 | KDD | Using Dynamic Time Warping to Find Patterns in Time Series. | Donald J. Berndt, James Clifford |