| 2006 | BIBE | A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data. | Dong-Guk Shin, John Bluis, Yoo Ah Kim, Winfried Krueger, Jeffrey Maddox, Ravi Nori, Nathan Viniconis, Hsin-Wei Wang, Alan Wong, David W. Rowe |
| 2003 | BIBE | Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metri. | John Bluis, Dong-Guk Shin |
| 2001 | BIBE | Comparing Trees in a Phylogenetic Relationship Repository. | John Bluis, Ravi Nori, Hsin-Wei Wang, Pinglei Zhou, J. Peter Gogarten, Dong-Guk Shin |
| 2000 | AVI | CBM: A Visual Query Interface Model based on Annotated Cartoon Diagrams. | Dong-Guk Shin, Ravi Shankar Nori |
| 2000 | BIBE | A Graph-based Meta-data Framework for Interoperation between Genome Databases. | Kei-Hoi Cheung, Dong-Guk Shin |
| 1999 | CBMS | Xyntagma: a Graphical Query Interface for the ACeDB Genome Databases. | Wally Grajewski, Dong-Guk Shin, Lei Liu |
| 1998 | AI | Establishing Logical Connectivity between Query Keywords and Database Contents. | Dong-Guk Shin, Lung-Yung Chu |
| 1998 | AMIA | Automatic query mapping among genomic databases: a pilot exploration. | Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin |
| 1998 | AVI | An epistemological display query interface. | Dong-Guk Shin, Wally Grajewski, Lung-Yung Chu |
| 1998 | CATA | A simple model capable of expressing meta-data for database interoperability. | Kei-Hoi Cheung, Dong-Guk Shin |
| 1998 | CATA | An effective heuristic algorithm for finding a steiner tree in graphs. | Lung-Yung Chu, Dong-Guk Shin |
| 1998 | CATA | A lightweight computational model for achieving location transparency in distributed environments. | Richard T. Landers, Dong-Guk Shin |
| 1994 | ECAI | A Context-Sensitive Discretization of Numeric Attributes for Classification Learning. | Changhwan Lee, Dong-Guk Shin |
| 1988 | COMPSAC | Knowledge-aided engineering environment for design and manufacturing. | Dong-Guk Shin, Fred J. Maryanski |