| 2016 | ALIFE | Learning Cassins Vireo (Vireo cassinii) syntax through grammatical inference. | Charles E. Taylor, Edgar E. Vallejo, Richard Hedley, Julio G. Arriaga |
| 2016 | ALIFE | PajaroLoco: A suite of programs to study complex adaptive properties of animal language. An example of a Cassins vireo syntax network. | Charles E. Taylor, Edgar E. Vallejo, Hctor Snchez |
| 2010 | ALIFE | A Self-Supervised Classifier Ensemble for Source Recognition in Acoustic Sensor Arrays. | Edgar E. Vallejo, Charles E. Taylor |
| 2009 | GECCO | Computer simulation on the maternal effect dominant embryonic arrest (MEDEA) for disease vector population replacement. | Mauricio Guevara, Edgar E. Vallejo |
| 2009 | GECCO | MOCEA: a multi-objective clustering evolutionary algorithm for inferring protein-protein functional interactions. | Jos Juan Tapia, Edgar E. Vallejo, Enrique Morett |
| 2008 | BIBE | A computer simulation model of gene replacement in vector populations. | Mauricio Guevara, Edgar E. Vallejo |
| 2008 | CEC | A clustering genetic algorithm for inferring protein-protein functional interactions from phylogenetic profiles. | Jos Juan Tapia, Edgar E. Vallejo |
| 2007 | ICDM | Targeting Input Data for Acoustic Bird Species Recognition Using Data Mining and HMMs. | Erika Vilches, Ivan A. Escobar, Edgar E. Vallejo, Charles E. Taylor |
| 2006 | CIBCB | Fuzzy C-means for inferring functional coupling of proteins from their phylogenetic profiles. | Juan Carlos Fernandez, Edgar E. Vallejo, Enrique Morett |
| 2006 | CIBCB | Inferring functional coupling of proteins using the Evolutionary Bond Energy Algorithm. | Ryosuke Watanabe, Edgar E. Vallejo, Enrique Morett |
| 2006 | ICPR | Data Mining Applied to Acoustic Bird Species Recognition. | Erika Vilches, Ivan A. Escobar, Edgar E. Vallejo, Charles E. Taylor |
| 2003 | GECCO | Evolutionary Two-Dimensional DNA Sequence Alignment. | Edgar E. Vallejo, Fernando Ramos |
| 2002 | GECCO | Evolving Finite Automata With Two-dimensional Output For DNA Recognition And Visualization. | Edgar E. Vallejo, Fernando Ramos |
| 2001 | EUROGP | Evolving Turing Machines for Biosequence Recognition and Analysis. | Edgar E. Vallejo, Fernando Ramos |
| 2000 | GECCO | Evolving Insect Locomotion using Non-uniform Cellular Automata. | Edgar E. Vallejo, Fernando Ramos |