| 2016 | PDP | Optimal Time and Energy Efficient Work Distributions in Heterogeneous Systems. | Valon Raca, Eduard Mehofer, Marcus Hudec |
| 2015 | SBAC-PAD | Device-Sensitive Framework for Handling Heterogeneous Asymmetric Clusters Efficiently. | Valon Raca, Eduard Mehofer |
| 2012 | PDP | Optimization Techniques and Performance Analyses of Two Life Science Algorithms for Novel GPU Architectures. | David Dilch, Eduard Mehofer |
| 2009 | CISIS | Experimental Study of Multithreading to Improve Memory Hierarchy Performance of Multi-core Processors for Scientific Applications. | Enes Bajrovic, Eduard Mehofer |
| 2008 | EuroPar | Towards an Intelligent Environment for Programming Multi-core Computing Systems. | Sabri Pllana, Siegfried Benkner, Eduard Mehofer, Lasse Natvig, Fatos Xhafa |
| 2003 | EuroPar | Partial Redundancy Elimination with Predication Techniques. | Bernhard Scholz, Eduard Mehofer, R. Nigel Horspool |
| 2002 | CC | A Representation for Bit Section Based Analysis and Optimization. | Rajiv Gupta, Eduard Mehofer, Youtao Zhang |
| 2001 | CC | A Novel Probabilistic Data Flow Framework. | Eduard Mehofer, Bernhard Scholz |
| 2001 | PDP | Probabilistic Communication Optimizations and Parallelization for Distributed-Memory Systems. | Eduard Mehofer, Bernhard Scholz |
| 1998 | ICS | Problem and Machine Sensitive Communication Optimization. | Thomas Fahringer, Eduard Mehofer |
| 1997 | EuroPar | Optimal Distribution Assignment Placement. | Jens Knoop, Eduard Mehofer |