| 2012 | AMIA | Active Learning-Based Corpus Annotation - The PathoJen Experience. | Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler |
| 2012 | LREC | Iterative Refinement and Quality Checking of Annotation Guidelines - How to Deal Effectively with Semantically Sloppy Named Entity Types, such as Pathological Phenomena. | Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler, Jenny Traumller, Susann Schrder, Kerstin Hornbostel |
| 2012 | PSB | The Extraction of Pharmacogenetic and Pharmacogenomic Relations - A Case Study Using PharmGKB. | Ekaterina Buyko, Elena Beisswanger, Udo Hahn |
| 2011 | IDA | Towards Automatic Pathway Generation from Biological Full-Text Publications. | Ekaterina Buyko, Jrg Linde, Steffen Priebe, Udo Hahn |
| 2010 | EMNLP | Evaluating the Impact of Alternative Dependency Graph Encodings on Solving Event Extraction Tasks. | Ekaterina Buyko, Udo Hahn |
| 2010 | LREC | The GeneReg Corpus for Gene Expression Regulation Events - An Overview of the Corpus and its In-Domain and Out-of-Domain Interoperability. | Ekaterina Buyko, Elena Beisswanger, Udo Hahn |
| 2010 | LREC | The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers. | Dietrich Rebholz-Schuhmann, Antonio Jos Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Katrin Tomanek, Elena Beisswanger, Udo Hahn |
| 2008 | COLING | Are Morpho-Syntactic Features More Predictive for the Resolution of Noun Phrase Coordination Ambiguity than Lexico-Semantic Similarity Scores? | Ekaterina Buyko, Udo Hahn |
| 2008 | LREC | Ontology-Based Interface Specifications for a NLP Pipeline Architecture. | Ekaterina Buyko, Christian Chiarcos, Antonio Pareja-Lora |
| 2008 | LREC | Semantic Annotations for Biology: a Corpus Development Initiative at the Jena University Language & Information Engineering (JULIE) Lab. | Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Michael Poprat, Katrin Tomanek, Joachim Wermter |