| 2019 | AMIA | Towards Reliable ARDS Clinical Decision Support: ARDS Patient Analytics with Free-text and Structured EMR Data. | Emilia Apostolova, Amit Uppal, Jessica Galarraga, Ioannis Koutroulis, Tim Tschampel, Tony Wang, Tom Velez |
| 2017 | AMIA | Open Globe Injury Patient Identification in Warfare Clinical Notes. | Emilia Apostolova, Helen A. White, Patty Morris, David Eliason, Tom Velez |
| 2015 | NAACL | Digital Leafleting: Extracting Structured Data from Multimedia Online Flyers. | Emilia Apostolova, Payam Pourashraf, Jeffrey Sack |
| 2014 | EMNLP | Combining Visual and Textual Features for Information Extraction from Online Flyers. | Emilia Apostolova, Noriko Tomuro |
| 2011 | ACL | Automatic Extraction of Lexico-Syntactic Patterns for Detection of Negation and Speculation Scopes. | Emilia Apostolova, Noriko Tomuro, Dina Demner-Fushman |
| 2010 | LREC | Djangology: A Light-weight Web-based Tool for Distributed Collaborative Text Annotation. | Emilia Apostolova, Sean Neilan, Gary An, Noriko Tomuro, Steven L. Lytinen |
| 2009 | NAACL | Towards Automatic Image Region Annotation - Image Region Textual Coreference Resolution. | Emilia Apostolova, Dina Demner-Fushman |