| 2017 | CIBCB | Modeling protein structural transitions as a multiobjective optimization problem. | Emmanuel Sapin, Kenneth A. De Jong, Amarda Shehu |
| 2017 | GECCO | Evolutionary search for paths on protein energy landscapes. | Emmanuel Sapin, Kenneth A. De Jong, Amarda Shehu |
| 2017 | GECCO | An evolutionary algorithm to model structural excursions of a protein. | Emmanuel Sapin, Kenneth A. De Jong, Amarda Shehu |
| 2016 | GECCO | A Novel EA-based Memetic Approach for Efficiently Mapping Complex Fitness Landscapes. | Emmanuel Sapin, Kenneth A. De Jong, Amarda Shehu |
| 2016 | GECCO | Path-based Guidance of an Evolutionary Algorithm in Mapping a Fitness Landscape and its Connectivity. | Emmanuel Sapin, Kenneth A. De Jong, Amarda Shehu |
| 2015 | GECCO | Evolution Strategies for Exploring Protein Energy Landscapes. | Rudy Clausen, Emmanuel Sapin, Kenneth A. De Jong, Amarda Shehu |
| 2015 | GECCO | Mapping Multiple Minima in Protein Energy Landscapes with Evolutionary Algorithms. | Emmanuel Sapin, Kenneth A. De Jong, Amarda Shehu |
| 2013 | GECCO | Subset-based ant colony optimisation for the discovery of gene-gene interactions in genome wide association studies. | Emmanuel Sapin, Ed Keedwell, Timothy M. Frayling |
| 2012 | IJCCI | T-ACO Tournament Ant Colony Optimisation for High-dimensional Problems. | Emmanuel Sapin, Ed Keedwell |
| 2010 | CEC | Evolutionary heuristics for automatic discoveries of cellular automata simulating AND gates. | Emmanuel Sapin |
| 2009 | IJCCI | The Fly Algorithm Revisited - Adaptation to CMOS Image Sensors. | Emmanuel Sapin, Jean Louchet, Evelyne Lutton |
| 2007 | CEC | A Genetic approach to search for glider guns in cellular automata. | Emmanuel Sapin, Larry Bull, Andrew Adamatzky |
| 2004 | GECCO | A New Universal Cellular Automaton Discovered by Evolutionary Algorithms. | Emmanuel Sapin, Olivier Bailleux, Jean-Jacques Chabrier, Pierre Collet |
| 2003 | EUROGP | Research of a Cellular Automaton Simulating Logic Gates by Evolutionary Algorithms. | Emmanuel Sapin, Olivier Bailleux, Jean-Jacques Chabrier |