| 2020 | CVPR | A web-based intelligence platform for diagnosis of malaria in thick blood smear images: a case for a developing country. | Rose Nakasi, Jeremy Francis Tusubira, Aminah Zawedde, Ali Mansourian, Ernest Mwebaze |
| 2020 | CVPR | Improving In-field Cassava Whitefly Pest Surveillance with Machine Learning. | Jeremy Francis Tusubira, Solomon Nsumba, Flavia Ninsiima, Benjamin Akera, Guy Acellam, Joyce Nakatumba, Ernest Mwebaze, John A. Quinn, Tonny J. Oyana |
| 2018 | HCOMP | Crowdsourcing Real-Time Viral Disease and Pest Information: A Case of Nation-Wide Cassava Disease Surveillance in a Developing Country. | Daniel Mutembesa, Christopher Omongo, Ernest Mwebaze |
| 2016 | ICMLA | Machine Learning for Plant Disease Incidence and Severity Measurements from Leaf Images. | Ernest Mwebaze, Godliver Owomugisha |
| 2015 | ESANN | Combining dissimilarity measures for prototype-based classification. | Ernest Mwebaze, Gjalt Bearda, Michael Biehl, Dietlind Zhlke |
| 2011 | AAAI | Modeling and Monitoring Crop Disease in Developing Countries. | John Alexander Quinn, Kevin Leyton-Brown, Ernest Mwebaze |
| 2011 | ESANN | Causal relevance learning for robust classification under interventions. | Ernest Mwebaze, John A. Quinn, Michael Biehl |
| 2010 | ESANN | Divergence based Learning Vector Quantization. | Ernest Mwebaze, Petra Schneider, Frank-Michael Schleif, Sven Haase, Thomas Villmann, Michael Biehl |