| 2019 | ESANN | Progress Towards Graph Optimization: Efficient Learning of Vector to Graph Space Mappings. | Stefan Mautner, Rolf Backofen, Fabrizio Costa |
| 2017 | ESANN | Fast hyperparameter selection for graph kernels via subsampling and multiple kernel learning. | Michele Donini, Nicol Navarin, Ivano Lauriola, Fabio Aiolli, Fabrizio Costa |
| 2017 | ESANN | The Conjunctive Disjunctive Node Kernel. | Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa |
| 2017 | ICANN | Link Enrichment for Diffusion-Based Graph Node Kernels. | Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa |
| 2017 | ICONIP | Joint Neighborhood Subgraphs Link Prediction. | Dinh Tran-Van, Alessandro Sperduti, Fabrizio Costa |
| 2016 | ESANN | RNAsynth: constraints learning for RNA inverse folding. | Fabrizio Costa, Parastou Kohvaei, Robert Kleinkauf |
| 2016 | RECOMB | AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. | Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka |
| 2015 | IJCAI | kLog: A Language for Logical and Relational Learning with Kernels (Extended Abstract). | Paolo Frasconi, Fabrizio Costa, Luc De Raedt, Kurt De Grave |
| 2014 | ACL | kLogNLP: Graph Kernel-based Relational Learning of Natural Language. | Mathias Verbeke, Paolo Frasconi, Kurt De Grave, Fabrizio Costa, Luc De Raedt |
| 2014 | ECCB | Scalable structural clustering of local RNA secondary structures. | Fabrizio Costa, Steffen Heyne, Dominic Rose, Rolf Backofen |
| 2014 | SDM | Relational Regularization and Feature Ranking. | Fabrizio Costa, Mathias Verbeke, Luc De Raedt |
| 2012 | SSPR | A Relational Kernel-Based Framework for Hierarchical Image Understanding. | Laura Antanas, Paolo Frasconi, Fabrizio Costa, Tinne Tuytelaars, Luc De Raedt |
| 2011 | ICDM | Random Forest Based Feature Induction. | Celine Vens, Fabrizio Costa |
| 2010 | ICML | Fast Neighborhood Subgraph Pairwise Distance Kernel. | Fabrizio Costa, Kurt De Grave |
| 2009 | KDD | Handling missing values and censored data in PCA of pharmacological matrices. | Jan Ramon, Fabrizio Costa |
| 2008 | ICDM | Towards Combining Structured Pattern Mining and Graph Kernels. | Fabrizio Costa, Bjrn Bringmann |
| 2006 | EACL | Decomposition Kernels for Natural Language Processing. | Fabrizio Costa, Sauro Menchetti, Alessio Ceroni, Andrea Passerini, Paolo Frasconi |
| 2005 | ICML | Weighted decomposition kernels. | Sauro Menchetti, Fabrizio Costa, Paolo Frasconi |
| 2004 | WWW | Distributed community crawling. | Fabrizio Costa, Paolo Frasconi |
| 2002 | ECAI | Enhancing First-Pass Attachment Prediction. | Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Patrick Sturt, Giovanni Soda |
| 2000 | KES | Learning incremental syntactic structures with recursive neural networks. | Fabrizio Costa, Paolo Frasconi, Vincenzo Lombardo, Giovanni Soda |
| 1999 | ESANN | A topological transformation for hidden recursive modelsarchitecture networks. | Fabrizio Costa, Paolo Frasconi, Giovanni Soda |