| 2020 | AMIA | Identifying Rare Disease Studies by Natural Language Processing. | Huan He, Feichen Shen, Michael Lin, Hongfang Liu |
| 2020 | AMIA | Accelerating Development of Learning Healthcare Systems via Distantly Supervised Knowledge Discovery. | Andrew Wen, Sunyang Fu, Feichen Shen, Hongfang Liu |
| 2020 | AMIA | Extracting Patient Genetic Information from Unstructured Clinical Notes. | Yiqing Zhao, Hanzhong Yu, Luke A. Carlson, Feichen Shen, Sunyang Fu, Hongfang Liu, Chen Wang |
| 2020 | CBMS | Enrich Rare Disease Phenotypic Characterizations via a Graph Convolutional Network Based Recommendation System. | Feichen Shen, Andrew Wen, Hongfang Liu |
| 2020 | CBMS | Subgrouping Rare Disease Patients Leveraging the Human Phenotype Ontology Embeddings. | Feichen Shen, Andrew Wen, Hongfang Liu |
| 2020 | CBMS | A Deep Profiling and Visualization Framework to Audit Clinical Assessment Variation. | Andrew Wen, Feichen Shen, Sungrim Moon, Hongfang Liu, Jungwei Fan |
| 2019 | AMIA | Leveraging a Data-Driven Strategy to Enrich Rare Disease Knowledge. | Feichen Shen, Yiqing Zhao, Hongfang Liu |
| 2018 | AMIA | Incorporating Knowledge-Driven Insights into a Collaborative Filtering Model to Facilitate the Differential Diagnosis of Rare Diseases. | Feichen Shen, Hongfang Liu |
| 2018 | AMIA | Combining Knowledge and Data Driven Insights to Facilitate the Differential Diagnosis of Rare Diseases. | Feichen Shen, Hongfang Liu |
| 2017 | AMIA | A Resource for Clinical Semantic Textual Similarity. | Naveed Afzal, Yanshan Wang, Feichen Shen, Liwei Wang, Hongfang Liu |
| 2017 | AMIA | Mining Hierarchies and Similarity Clusters from Value Set Repositories. | Kevin J. Peterson, Guoqian Jiang, Scott M. Brue, Feichen Shen, Hongfang Liu |
| 2017 | AMIA | Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis. | Feichen Shen, Sijia Liu, Yanshan Wang, Liwei Wang, Naveed Afzal, Hongfang Liu |
| 2017 | AMIA | Accelerating Rare Disease Diagnosis with Collaborative Filtering. | Feichen Shen, Sijia Liu, Yanshan Wang, Liwei Wang, Naveed Afzal, Hongfang Liu |
| 2017 | AMIA | Semantic Representations of Medical Terms: A Comparison Study of Word Embeddings Trained on Clinical Notes and PubMed Articles. | Yanshan Wang, Naveed Afzal, Liwei Wang, Feichen Shen, Hongfang Liu |
| 2017 | AMIA | Recommending education materials for diabetic questions using information retrieval approaches. | Yuqun Zeng, Yanshan Wang, Feichen Shen, Sijia Liu, Liwei Wang, Majid Rastegar-Mojarad, Xusheng Liu, Hongfang Liu |
| 2015 | PERCOM | A pervasive framework for real-time activity patterns of mobile users. | Feichen Shen |
| 2015 | PERCOM | SAMAF: Situation aware mobile apps framework. | Feichen Shen, Yugyung Lee |
| 2015 | PERCOM | PEMAR: A pervasive middleware for activity recognition with smart phones. | Prakash Vaka, Feichen Shen, Mayanka Chandrashekar, Yugyung Lee |
| 2014 | AMIA | Reducing the Screening Burden of Systematic Review with a Multiple-level Relevance Ranking System. | Dingcheng Li, Zhen Wang, Feichen Shen, Mohammad Hassan Murad, Hongfang Liu |
| 2014 | PSB | Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches. | Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute |