| 2009 | CIBCB | Assessing the impact of network depth on the analysis of PPI networks: A case study. | Jaine K. Blayney, Haiying Wang, Huiru Zheng, Francisco Azuaje |
| 2008 | CIBCB | Reassessing the limit of data integration for the prediction of protein-protein interactions in Saccharomyces cerevisiae. | Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje |
| 2007 | BIBE | Supervised Statistical and Machine Learning Approaches to Inferring Pairwise and Module-Based Protein Interaction Networks. | Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje |
| 2007 | IJCAI | Self-Adaptive Neural Networks Based on a Poisson Approach for Knowledge Discovery. | Haiying Wang, Huiru Zheng, Francisco Azuaje |
| 2006 | BIBE | A Supervised Learning Approach to Predicting Coronary Heart Disease Complications in Type 2 Diabetes Mellitus Patients. | Marisol Giardina, Francisco Azuaje, Paul J. McCullagh, Roy Harper |
| 2006 | BIBE | Semi-Supervised Clustering Models for Clinical Risk Assessment. | Yongyang Huo, Francisco Azuaje, Paul J. McCullagh, Roy Harper |
| 2006 | CBMS | Computational Approaches to Supporting Large-Scale Analysis of Photoreceptor-Enriched Gene Expression. | Haiying Wang, Huiru Zheng, Francisco Azuaje |
| 2006 | ICDM | Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. | Francisco Azuaje, Haiying Wang, Huiru Zheng, Olivier Bodenreider, Alban Chesneau |
| 2005 | CBMS | A Missing Data Estimation Analysis in Type II Diabetes Databases. | Marisol Giardina, Yongyang Huo, Francisco Azuaje, Paul J. McCullagh, Roy Harper |
| 2005 | CBMS | An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis. | Haiying Wang, Francisco Azuaje, Olivier Bodenreider |
| 2004 | BIBE | Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study. | Francisco Azuaje, Olivier Bodenreider |
| 2004 | CIBCB | Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships. | Haiying Wang, Francisco Azuaje, Olivier Bodenreider, Joaqun Dopazo |
| 2004 | CIS | Interactive GSOM-Based Approaches for Improving Biomedical Pattern Discovery and Visualization. | Haiying Wang, Francisco Azuaje, Norman D. Black |
| 2004 | DaWaK | Data Mining Approaches to Diffuse Large B-Cell Lymphoma Gene Expression Data Interpretation. | Jess S. Aguilar-Ruiz, Francisco Azuaje, Jos Cristbal Riquelme Santos |
| 2004 | ICPR | A Non-Random Data Sampling Method for Classification Model Assessment. | Dan Sprevak, Francisco Azuaje, Haiying Wang |
| 2004 | IDEAL | Knowledge Discovery in Lymphoma Cancer from Gene-Expression. | Jess S. Aguilar-Ruiz, Francisco Azuaje |
| 2004 | SAC | An integrated tool for microarray data clustering and cluster validity assessment. | Nadia Bolshakova, Francisco Azuaje, Padraig Cunningham |
| 2001 | SMC | Adaptation and reverse evolution in a digital ecosystem. | Francisco Azuaje |
| 2000 | BIBE | Making genome expression data meaningful: Prediction and discovery of classes of cancer through a connectionist learning approach. | Francisco Azuaje |
| 1999 | CATA | On local and global feature weight discovery for case-based reasoning. | Werner Dubitzky, Francisco Azuaje, Philippe Lopes, Paul J. McCullagh, Y. Song |